RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA689790" and tax_clade = "Haptista"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 2 ✖

bioproject 1

  • PRJNA689790 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14697710 14697710 PRJNA689790_S_NODE_8932_length_198_cov_1.341615_g8817_i0 PRJNA689790 8932 198 1.341615 2.6563977 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 111 2.79e-20   NTclustered gi|551555356|ref|XM_005764818.1| 280463 g8817 i0 79.375 30.3333333333333 160 31 80 2 18 176 583 741 Emiliania huxleyi CCMP1516 mitochondrial malic enzyme (NAD-ME_2), partial mRNA blastn 6006 111 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
17246651 17246651 PRJNA689790_S_NODE_6634_length_231_cov_2.530928_g6519_i0 PRJNA689790 6634 231 2.530928 5.84644368 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 204 5.3799999999999997e-48   NTclustered gi|551548842|ref|XM_005762007.1| 280463 g6519 i0 86.813 16.2207792207792 182 24 79 0 47 228 196 377 Emiliania huxleyi CCMP1516 hypothetical protein mRNA blastn 3747 204 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;