RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

21 rows where analysis = "blastn", bioproject = "PRJNA689790" and tax_clade = "Discoba"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 21 ✖

bioproject 1

  • PRJNA689790 · 21 ✖

analysis 1

  • blastn · 21 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
668712 668712 PRJNA689790_S_NODE_1441_length_551_cov_4.766537_g1341_i0 PRJNA689790 1441 551 4.766537 26.26361887 Trypanosoma vivax 5699 Euglenozoa other_Eukaryota 289 3.7999999999999996e-73   NTclustered gi|340056612|emb|HE573026.1| 1055687 g1341 i0 82.769 66.8747731397459 325 54 59 2 226 549 518994 518671 Trypanosoma vivax Y486 annotated genomic contig, chromosome 10 blastn 36848 289 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma vivax
668762 668762 PRJNA689790_S_NODE_5821_length_248_cov_2.578199_g5706_i0 PRJNA689790 5821 248 2.578199 6.39393352 Paratrypanosoma confusum 1470209 Euglenozoa other_Eukaryota 220 5.81e-53   NTclustered gi|452768944|gb|KC534676.1| 1470209 g5706 i0 82.927 98.1088709677419 246 40 99 2 4 248 360 116 Trypanosomatidae sp. TS-2013 clone C24978L43121o22 hypothetical protein gene, partial cds blastn 24331 220 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Paratrypanosoma Paratrypanosoma confusum
3219602 3219602 PRJNA689790_S_NODE_3623_length_326_cov_2.006920_g3508_i0 PRJNA689790 3623 326 2.00692 6.5425592 Rhynchopus sp. ATCC 50230 202688 Euglenozoa other_Eukaryota 470 7.139999999999999e-128   NTclustered gi|84105340|gb|DQ295216.1| 202688 g3508 i0 92.661 99.0030674846626 327 22 100 2 1 326 914 589 Rhynchopus sp. ATCC 50230 beta tubulin gene, partial cds blastn 32275 470 1 Eukaryota Discoba   Euglenozoa Diplonemea   Diplonemidae Rhynchopus Rhynchopus sp. ATCC 50230
3219616 3219616 PRJNA689790_S_NODE_5243_length_263_cov_1.716814_g5128_i0 PRJNA689790 5243 263 1.716814 4.51522082 Trypanosoma conorhini 83891 Euglenozoa other_Eukaryota 141 4.9799999999999993e-29   NTclustered gi|1673133101|ref|XM_029369425.1| 83891 g5128 i0 77.099 52.2661596958175 262 49 98 10 3 260 649 903 Trypanosoma conorhini adenosylhomocysteinase (Tco025E_02500), partial mRNA blastn 13746 141 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma conorhini
4496762 4496762 PRJNA689790_S_NODE_1784_length_493_cov_5.561404_g1674_i0 PRJNA689790 1784 493 5.561404 27.41772172 Zelonia costaricensis 372075 Euglenozoa other_Eukaryota 494 6.65e-135   NTclustered gi|226347438|gb|FJ807259.1| 372075 g1674 i0 84.818 125.592292089249 494 71 99 3 2 493 25 516 Leptomonas costaricensis elongation factor 1 alpha gene, partial cds blastn 61917 494 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Zelonia Zelonia costaricensis
7047311 7047311 PRJNA689790_S_NODE_14206_length_160_cov_2.065041_g14091_i0 PRJNA689790 14206 160 2.065041 3.3040656 Trypanosoma conorhini 83891 Euglenozoa other_Eukaryota 143 7.649999999999998e-30   NTclustered gi|1673134151|ref|XM_029369857.1| 83891 g14091 i0 84 12.6625 150 22 93 2 2 150 1921 2069 Trypanosoma conorhini elongation factor 2 (Tco025E_02934), partial mRNA blastn 2026 143 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma conorhini
8321834 8321834 PRJNA689790_S_NODE_12667_length_168_cov_1.786260_g12552_i0 PRJNA689790 12667 168 1.78626 3.0009168 Rhynchomonas nasuta 127150 Euglenozoa other_Eukaryota 145 2.26e-30   NTclustered gi|33694253|gb|AY288514.1| 127150 g12552 i0 82.249 76.2857142857143 169 28 100 2 1 168 331 164 Rhynchomonas nasuta heat shock protein 70 gene, partial cds blastn 12816 145 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida Rhynchomonadidae Rhynchomonas Rhynchomonas nasuta
8321886 8321886 PRJNA689790_S_NODE_5127_length_266_cov_1.694323_g5012_i0 PRJNA689790 5127 266 1.694323 4.50689918 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 285 2.2e-72   NTclustered gi|290972772|ref|XM_002669079.1| 5762 g5012 i0 86.038 0.996240601503759 265 37 99 0 2 266 49 313 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_54415), partial mRNA blastn 265 285 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
9597293 9597293 PRJNA689790_S_NODE_5728_length_250_cov_2.009390_g5613_i0 PRJNA689790 5728 250 2.00939 5.023475 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 322 1.56e-83   NTclustered gi|290976731|ref|XM_002671047.1| 5762 g5613 i0 89.96 0.996 249 25 99 0 1 249 384 136 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_73871), partial mRNA blastn 249 322 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
12148030 12148030 PRJNA689790_S_NODE_15710_length_154_cov_1.666667_g15595_i0 PRJNA689790 15710 154 1.666667 2.56666718 Euglenaria clavata 344910 Euglenozoa other_Eukaryota 93.5 7.45e-15   NTclustered gi|2201014342|gb|OM865832.1| 344910 g15595 i0 90.278 2.80519480519481 72 5 47 2 39 110 550 619 Euglenaria clavata strain SHNUJmd small subunit ribosomal RNA gene, partial sequence; chloroplast blastn 432 93.5 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Euglenaria Euglenaria clavata
12148033 12148033 PRJNA689790_S_NODE_16390_length_152_cov_1.017391_g16275_i0 PRJNA689790 16390 152 1.017391 1.54643432 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 241 2.47e-59   NTclustered gi|290972987|ref|XM_002669186.1| 5762 g16275 i0 95.946 1.97368421052632 148 6 97 0 5 152 985 838 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_56405), mRNA blastn 300 241 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
13422601 13422601 PRJNA689790_S_NODE_12851_length_167_cov_1.800000_g12736_i0 PRJNA689790 12851 167 1.8 3.006 Rhynchopus sp. ATCC 50230 202688 Euglenozoa other_Eukaryota 217 4.69e-52   NTclustered gi|25986816|gb|AY122622.1| 202688 g12736 i0 90.798 5.34730538922156 163 13 97 2 3 164 1555 1394 Rhynchopus sp. ATCC50230 heat shock protein 90 (HSP-90) gene, partial cds blastn 893 217 1 Eukaryota Discoba   Euglenozoa Diplonemea   Diplonemidae Rhynchopus Rhynchopus sp. ATCC 50230
14697702 14697702 PRJNA689790_S_NODE_7132_length_222_cov_1.670270_g7017_i0 PRJNA689790 7132 222 1.67027 3.7079994 Trypanosoma vivax 5699 Euglenozoa other_Eukaryota 182 2.41e-41   NTclustered gi|340056612|emb|HE573026.1| 1055687 g7017 i0 82.028 59.0135135135135 217 35 97 4 1 215 518275 518489 Trypanosoma vivax Y486 annotated genomic contig, chromosome 10 blastn 13101 182 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma vivax
15206754 15206754 PRJNA689790_S_NODE_5052_length_268_cov_4.004329_g4937_i0 PRJNA689790 5052 268 4.004329 10.73160172 Trypanosoma 5690 Euglenozoa other_Eukaryota 228 3.8e-55   NTclustered gi|1673157502|ref|XM_029381500.1| 5698 g4937 i0 82.156 101.34328358209 269 44 99 4 2 268 721 987 Trypanosoma rangeli elongation factor 1-alpha (TraAM80_04577), partial mRNA blastn 27160 230 0.991304347826087 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma rangeli
17246592 17246592 PRJNA689790_S_NODE_10554_length_183_cov_1.047945_g10439_i0 PRJNA689790 10554 183 1.047945 1.91773935 Leishmania sp. Namibia 2802991 Euglenozoa other_Eukaryota 172 1.15e-38   NTclustered gi|2794991460|ref|XM_067852015.1| 2802991 g10439 i0 83.696 51.4918032786885 184 28 100 2 1 183 240 58 Leishmania sp. Namibia uncharacterized protein (JIQ42_03858), partial mRNA blastn 9423 172 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania sp. Namibia
19029815 19029815 PRJNA689790_S_NODE_4395_length_290_cov_1.233202_g4280_i0 PRJNA689790 4395 290 1.233202 3.5762858 root 1 Root_unresolved Root_unresolved 204 7.01e-48   NTclustered gi|1002446769|ref|XM_015803327.1| 157538 g4280 i0 79.932 71.0551724137931 294 45 100 10 1 290 456 173 Leptomonas pyrrhocoris cyclophilin a mRNA blastn 20606 206 0.990291262135922 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leptomonas Leptomonas pyrrhocoris
21071142 21071142 PRJNA689790_S_NODE_14557_length_159_cov_1.139344_g14442_i0 PRJNA689790 14557 159 1.139344 1.81155696 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 267 4.3199999999999996e-67   NTclustered gi|290988433|ref|XM_002676880.1| 5762 g14442 i0 96.855 9.49685534591195 159 5 100 0 1 159 711 553 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_82621), mRNA blastn 1510 267 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
21580332 21580332 PRJNA689790_S_NODE_3957_length_309_cov_1.422794_g3842_i0 PRJNA689790 3957 309 1.422794 4.39643346 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 165 3.55e-36   NTclustered gi|961494277|gb|KT003639.1| 5661 g3842 i0 80.751 51.7928802588997 213 39 69 2 4 215 221 10 Leishmania donovani Rab1 (Rab1) mRNA, complete cds blastn 16004 165 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania donovani
22346062 22346062 PRJNA689790_S_NODE_11718_length_174_cov_1.423358_g11603_i0 PRJNA689790 11718 174 1.423358 2.47664292 Monomorphina pseudopyrum 565119 Euglenozoa other_Eukaryota 224 2.93e-54   NTclustered gi|388269854|gb|JQ398664.1| 565119 g11603 i0 89.655 21.3045977011494 174 18 100 0 1 174 1130 957 Monomorphina pseudopyrum heat shock protein 90 (hsp90) mRNA, partial cds blastn 3707 224 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Monomorphina Monomorphina pseudopyrum
23621575 23621575 PRJNA689790_S_NODE_13079_length_166_cov_1.333333_g12964_i0 PRJNA689790 13079 166 1.333333 2.21333278 Trypanosoma vivax 5699 Euglenozoa other_Eukaryota 257 2.7400000000000003e-64   NTclustered gi|340058162|emb|HE573027.1| 1055687 g12964 i0 95.092 202.44578313253 163 8 100 0 1 163 2845863 2846025 Trypanosoma vivax Y486 annotated genomic contig, chromosome 11 blastn 33606 257 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma vivax
24894891 24894891 PRJNA689790_S_NODE_1000_length_665_cov_4.681529_g917_i0 PRJNA689790 1000 665 4.681529 31.13216785 Reclinomonas americana 48483 Root_unresolved Root_unresolved 311 9.9e-80   NTclustered gi|11466495|ref|NC_001823.1| 48483 g917 i0 81.203 45.0135338345865 399 64 59 9 40 433 37633 37241 Reclinomonas americana mitochondrion, complete genome blastn 29934 311 1 Eukaryota Discoba       Jakobida Histionidae Reclinomonas Reclinomonas americana

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;