RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA688931" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA688931 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5006390 5006390 PRJNA688931_P_NODE_24264_length_208_cov_0.955975_g24051_i0 PRJNA688931 24264 208 0.955975 1.988428 Geomonas 2651583 Bacteria Bacteria 331 2.0900000000000002e-86   NTclustered gi|2233265061|gb|CP096574.1| 2740185 g24051 i0 95.261 196.745192307692 211 7 100 2 1 208 885209 885419 Geomonas paludis strain RG22 chromosome, complete genome blastn 40923 331 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geomonas Geomonas paludis
8321747 8321747 PRJNA688931_P_NODE_41967_length_163_cov_0.912281_g41754_i0 PRJNA688931 41967 163 0.912281 1.48701803 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 195 2.13e-45   NTclustered gi|2893358420|emb|OZ220712.1| 2202153 g41754 i0 88.415 173 164 16 99 3 1 162 1711983 1711821 MAG: Thermodesulfobacteriota bacterium isolate 564989d4-0a31-48dd-8468-51938819ad86 genome assembly, chromosome: 1 blastn 28199 195 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
20304449 20304449 PRJNA688931_P_NODE_22296_length_217_cov_0.970238_g22083_i0 PRJNA688931 22296 217 0.970238 2.10541646 Geotalea 2910589 Bacteria Bacteria 298 2.23e-76   NTclustered gi|221562406|gb|CP001390.1| 316067 g22083 i0 93.564 212.175115207373 202 9 92 3 1 200 2114849 2114650 Geobacter daltonii FRC-32, complete genome blastn 46042 298 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geotalea Geotalea daltonii
25404592 25404592 PRJNA688931_P_NODE_42240_length_163_cov_0.903509_g42027_i0 PRJNA688931 42240 163 0.903509 1.47271967 root 1 Root_unresolved Root_unresolved 302 1.22e-77   NTclustered gi|470481184|ref|NR_076459.1| 29543 g42027 i0 100 183.20245398773 163 0 100 0 1 163 994 832 Pelobacter propionicus strain Ott Bd 1 23S ribosomal RNA gene, complete sequence blastn 29862 302 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Desulfuromonadaceae Pelobacter Pelobacter propionicus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;