RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA688931" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA688931 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
668450 668450 PRJNA688931_P_NODE_20141_length_228_cov_1.413408_g19928_i0 PRJNA688931 20141 228 1.413408 3.22257024 Cavenderia fasciculata 261658 Evosea other_Eukaryota 176 1.16e-39   NTclustered gi|470241101|ref|XM_004352074.1| 261658 g19928 i0 87.919 70.2456140350877 149 18 65 0 80 228 2483 2335 Cavenderia fasciculata RNA polymerase II largest subunit (rpb1), partial mRNA blastn 16016 176 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
7047149 7047149 PRJNA688931_P_NODE_32946_length_175_cov_2.214286_g32733_i0 PRJNA688931 32946 175 2.214286 3.8750005 Acytostelium subglobosum 361139 Evosea other_Eukaryota 115 1.85e-21   NTclustered gi|831756695|ref|XM_012893348.1| 1410327 g32733 i0 80.667 0.857142857142857 150 27 85 2 3 151 182 34 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 150 115 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
8321685 8321685 PRJNA688931_P_NODE_34767_length_170_cov_1.272727_g34554_i0 PRJNA688931 34767 170 1.272727 2.1636359 Acytostelium subglobosum 361139 Evosea other_Eukaryota 84.2 5.04e-12   NTclustered gi|831776054|ref|XM_012899232.1| 1410327 g34554 i0 82.796 0.729411764705882 93 16 55 0 10 102 1161 1253 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 124 84.2 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
12147734 12147734 PRJNA688931_P_NODE_15890_length_258_cov_1.923445_g15677_i0 PRJNA688931 15890 258 1.923445 4.9624881 Acytostelium subglobosum 361139 Evosea other_Eukaryota 128 3.79e-25   NTclustered gi|831792076|ref|XM_012904471.1| 1410327 g15677 i0 86.066 0.89922480620155 122 13 47 2 1 120 1524 1643 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 232 128 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
15971213 15971213 PRJNA688931_P_NODE_27493_length_194_cov_1.779310_g27280_i0 PRJNA688931 27493 194 1.77931 3.4518614 Heterostelium album 2086695 Evosea other_Eukaryota 54.7 0.005   NTclustered gi|1160560456|ref|XM_020578332.1| 670386 g27280 i0 96.875 0.164948453608247 32 1 16 0 78 109 1361 1330 Polysphondylium pallidum PN500 hypothetical protein partial mRNA blastn 32 54.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
24894859 24894859 PRJNA688931_P_NODE_6380_length_433_cov_2.067708_g6167_i0 PRJNA688931 6380 433 2.067708 8.95317564 Acytostelium subglobosum 361139 Evosea other_Eukaryota 54.7 0.012   NTclustered gi|831783851|ref|XM_012901808.1| 1410327 g6167 i0 96.875 0.0739030023094688 32 1 7 0 257 288 146 115 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 32 54.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;