RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA688931" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA688931 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1178085 1178085 PRJNA688931_P_NODE_36381_length_168_cov_0.865546_g36168_i0 PRJNA688931 36381 168 0.865546 1.45411728 Eukaryota 2759 Fungi Fungi 178 2.23e-40   NTclustered gi|82398266|gb|DQ273783.1| 281854 g36168 i0 85.799 101.041666666667 169 22 100 2 1 168 1409 1242 Chytridiales sp. JEL187 isolate AFTOL-ID 39 28S ribosomal RNA gene, partial sequence blastn 16975 178 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales     Chytridiales sp. JEL187
5772114 5772114 PRJNA688931_P_NODE_3045_length_650_cov_11.391015_g2855_i0 PRJNA688931 3045 650 11.391015 74.0415975 Polychytrium aggregatum 110093 Fungi Fungi 54.7 0.018   NTclustered gi|2432144566|ref|XM_053115345.1| 110093 g2855 i0 100 0.0446153846153846 29 0 4 0 382 410 553 581 Polychytrium aggregatum ran-specific GTPase-activating protein (BJ171DRAFT_616054), mRNA blastn 29 54.7 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
18520567 18520567 PRJNA688931_P_NODE_29615_length_186_cov_6.532847_g29402_i0 PRJNA688931 29615 186 6.532847 12.15109542 Batrachochytrium dendrobatidis 109871 Fungi Fungi 124 3.32e-24   NTclustered gi|575480197|ref|XM_006679330.1| 684364 g29402 i0 82 5.13440860215054 150 24 80 3 27 174 149 1 Batrachochytrium dendrobatidis JAM81 uncharacterized protein (BATDEDRAFT_19719), mRNA blastn 955 124 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium dendrobatidis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;