RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA688931" and tax_kingdom = "Orthornavirae"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Orthornavirae · 3 ✖

bioproject 1

  • PRJNA688931 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1944506 1944506 PRJNA688931_P_NODE_26502_length_198_cov_1.389262_g26289_i0 PRJNA688931 26502 198 1.389262 2.75073876 Hainan alphaflexivirus 2 2824425 Viruses Viruses 158 3.54e-34   NTclustered gi|2075444288|gb|MW897284.1| 2824425 g26289 i0 86.713 5.48484848484848 143 17 72 2 53 194 4064 4205 MAG: Hainan alphaflexivirus 2 isolate R87-k141_314575 replicase gene, partial cds; and NTP-binding helicase and hypothetical protein genes, complete cds blastn 1086 158 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae   Hainan alphaflexivirus 2
12147893 12147893 PRJNA688931_P_NODE_37050_length_167_cov_0.881356_g36837_i0 PRJNA688931 37050 167 0.881356 1.47186452 Bermuda grass latent virus 1930269 Viruses Viruses 287 3.53e-73   NTclustered gi|2221822463|gb|MZ671023.1| 1930269 g36837 i0 97.605 9 167 4 100 0 1 167 286 120 Bermuda grass latent virus isolate 5658 polyprotein, putative RNA-dependent RNA polymerase region, gene, partial cds blastn 1503 287 1 Viruses   Orthornavirae Kitrinoviricota Tolucaviricetes Tolivirales Tombusviridae Panicovirus Bermuda grass latent virus
24894809 24894809 PRJNA688931_P_NODE_42500_length_163_cov_0.903509_g42287_i0 PRJNA688931 42500 163 0.903509 1.47271967 Tobamovirus rapae 3432887 Viruses Viruses 302 1.22e-77   NTclustered gi|167834146|gb|EU413669.1| 29272 g42287 i0 100 21.6748466257669 163 0 100 0 1 163 977 1139 Turnip vein-clearing virus isolate Pet-MS RNA replicase read-through component gene, partial cds; and movement protein and coat protein genes, complete cds blastn 3533 302 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus rapae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;