RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA688931" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 5 ✖

bioproject 1

  • PRJNA688931 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1178051 1178051 PRJNA688931_P_NODE_19881_length_229_cov_2.527778_g19668_i0 PRJNA688931 19881 229 2.527778 5.78861162 Fusobacterium 848 Bacteria Bacteria 361 2.9899999999999998e-95   NTclustered gi|1370545701|gb|CP028105.1| 861 g19668 i0 95.197 518.004366812227 229 10 100 1 1 229 984120 983893 Fusobacterium ulcerans strain ATCC 49185 chromosome, complete genome blastn 118623 364 0.991758241758242 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium ulcerans
1944423 1944423 PRJNA688931_P_NODE_17962_length_242_cov_1.492228_g17749_i0 PRJNA688931 17962 242 1.492228 3.61119176 Fusobacterium pseudoperiodonticum 2663009 Bacteria Bacteria 436 5.1499999999999985e-118   NTclustered gi|2704959642|gb|CP077196.1| 2663009 g17749 i0 99.174 485.793388429752 242 2 100 0 1 242 146252 146493 Fusobacterium pseudoperiodonticum strain SB039 chromosome, complete genome blastn 117562 436 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium pseudoperiodonticum
15206700 15206700 PRJNA688931_P_NODE_35772_length_168_cov_1.302521_g35559_i0 PRJNA688931 35772 168 1.302521 2.18823528 Cetobacterium 180162 Bacteria Bacteria 311 2.11e-80   NTclustered gi|2865368125|gb|CP122294.1| 188913 g35559 i0 100 513.136904761905 168 0 100 0 1 168 278654 278487 Cetobacterium somerae strain MSU41 plasmid p41_t2, complete sequence blastn 86207 311 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
15971303 15971303 PRJNA688931_P_NODE_38433_length_166_cov_0.888889_g38220_i0 PRJNA688931 38433 166 0.888889 1.47555574 Fusobacterium hominis 2764326 Bacteria Bacteria 128 2.25e-25   NTclustered gi|1897733338|gb|CP060637.1| 2764326 g38220 i0 80.606 0.993975903614458 165 32 99 0 1 165 1280503 1280667 Fusobacterium hominis strain NSJ-57 chromosome, complete genome blastn 165 128 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium hominis
24129944 24129944 PRJNA688931_P_NODE_15459_length_262_cov_1.793427_g15246_i0 PRJNA688931 15459 262 1.793427 4.69877874 root 1 Root_unresolved Root_unresolved 479 9.249999999999999e-131   NTclustered gi|169792031|gb|EU419208.1| 860 g15246 i0 99.618 119.996183206107 262 1 100 0 1 262 742 481 Fusobacterium periodonticum isolate 3-1-7B 16S ribosomal RNA gene, partial sequence blastn 31439 479 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium periodonticum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;