RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA688931" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 3 ✖

bioproject 1

  • PRJNA688931 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8321670 8321670 PRJNA688931_P_NODE_32647_length_176_cov_2.031496_g32434_i0 PRJNA688931 32647 176 2.031496 3.57543296 uncultured delta proteobacterium 34034 Bacteria Bacteria 130 6.670000000000001e-26   NTclustered gi|2874253999|emb|OY970324.1| 34034 g32434 i0 82.781 1.10795454545455 151 20 84 6 26 173 83646 83499 MAG: uncultured delta proteobacterium isolate MFD05502.bin.1.132 genome assembly, chromosome: 1 blastn 195 130 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
11381509 11381509 PRJNA688931_P_NODE_11729_length_305_cov_2.730469_g11516_i0 PRJNA688931 11729 305 2.730469 8.32793045 Bacteria 2 Bacteria Bacteria 65.8 3.65e-6   NTclustered gi|618731234|emb|HE803860.1| 34034 g11516 i0 91.489 0.308196721311475 47 4 15 0 201 247 1346 1300 Uncultured delta proteobacterium partial 16S rRNA gene, isolate 1.2, clone 2 blastn 94 65.8 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
20304465 20304465 PRJNA688931_P_NODE_29236_length_188_cov_1.172662_g29023_i0 PRJNA688931 29236 188 1.172662 2.20460456 Bacteria 2 Bacteria Bacteria 298 1.87e-76   NTclustered gi|451917518|gb|KC451382.1| 34034 g29023 i0 95.263 99.6595744680851 190 5 100 4 1 188 219 32 Uncultured delta proteobacterium clone RLBp4899 16S ribosomal RNA gene, partial sequence blastn 18736 298 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;