RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA688931" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 4 ✖

bioproject 1

  • PRJNA688931 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6282037 6282037 PRJNA688931_P_NODE_18205_length_240_cov_2.319372_g17992_i0 PRJNA688931 18205 240 2.319372 5.5664928 Pithophoraceae 926346 Plants Plants 54.7 0.006   NTclustered gi|1169296929|gb|KY364699.1| 162062 g17992 i0 100 0.241666666666667 29 0 12 0 164 192 5824 5796 Aegagropila linnaei 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 58 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Cladophorales Pithophoraceae Aegagropila Aegagropila linnaei
13422397 13422397 PRJNA688931_P_NODE_27371_length_195_cov_1.116438_g27158_i0 PRJNA688931 27371 195 1.116438 2.1770541 Prototheca blaschkeae 328666 Plants Plants 220 4.36e-53   NTclustered gi|1159431138|gb|KX389282.1| 328666 g27158 i0 87.435 104.441025641026 191 24 98 0 3 193 787 597 Prototheca blaschkeae isolate SAG-2064 alpha tubulin (TUA1) mRNA, complete cds blastn 20366 220 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca blaschkeae
13422483 13422483 PRJNA688931_P_NODE_37451_length_167_cov_0.872881_g37238_i0 PRJNA688931 37451 167 0.872881 1.45771127 Chlamydomonas reinhardtii 3055 Plants Plants 121 3.789999999999999e-23   NTclustered gi|2082242873|ref|XM_001702902.2| 3055 g37238 i0 88.776 30.2634730538922 98 11 59 0 39 136 1341 1244 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_03g182800v5), mRNA blastn 5054 121 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
24894847 24894847 PRJNA688931_P_NODE_5560_length_468_cov_2.212411_g5348_i0 PRJNA688931 5560 468 2.212411 10.35408348 Chlorella variabilis 554065 Plants Plants 180 2e-40   NTclustered gi|552812172|ref|XM_005843586.1| 554065 g5348 i0 77.852 47.8931623931624 298 60 63 6 132 426 132 426 Chlorella variabilis histone H3.2 precursor (CHLNCDRAFT_139997) mRNA, complete cds blastn 22414 180 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;