RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA688931" and tax_clade = "Haptista"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 3 ✖

bioproject 1

  • PRJNA688931 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
668477 668477 PRJNA688931_P_NODE_24661_length_206_cov_1.254777_g24448_i0 PRJNA688931 24661 206 1.254777 2.58484062 Meringosphaera mediterranea 2837474 Root_unresolved Root_unresolved 128 2.91e-25   NTclustered gi|2526806211|gb|OR195157.1| 2837474 g24448 i0 85.156 44.6067961165049 128 16 62 3 6 132 2814 2939 Meringosphaera mediterranea isolate S7 internal transcribed spacer 2 and large subunit ribosomal RNA gene, partial sequence blastn 9189 128 1 Eukaryota Haptista     Centroplasthelida     Meringosphaera Meringosphaera mediterranea
17755912 17755912 PRJNA688931_P_NODE_15994_length_257_cov_1.899038_g15781_i0 PRJNA688931 15994 257 1.899038 4.88052766 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 62.1 3.88e-5   NTclustered gi|551611011|ref|XM_005786544.1| 280463 g15781 i0 92.857 1.91439688715953 42 3 16 0 36 77 772 813 Emiliania huxleyi CCMP1516 hypothetical protein mRNA blastn 492 62.1 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
24894604 24894604 PRJNA688931_P_NODE_17760_length_243_cov_3.190722_g17547_i0 PRJNA688931 17760 243 3.190722 7.75345446 Haptophyta environmental samples 171259 Haptophyta other_Eukaryota 132 2.7300000000000003e-26   NTclustered gi|194146310|gb|EU616277.1| 171259 g17547 i0 86.066 62.59670781893 122 17 50 0 1 122 712 591 Uncultured haptophyte clone M18_59_165 28S ribosomal RNA gene, partial sequence blastn 15211 132 1 Eukaryota Haptista   Haptophyta         Haptophyta environmental samples

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;