RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA688736" and tax_phylum = "Euglenozoa"

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tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA688736 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
668151 668151 PRJNA688736_P_NODE_48081_length_245_cov_0.906977_g47796_i0 PRJNA688736 48081 245 0.906977 2.22209365 Leptomonas pyrrhocoris 157538 Euglenozoa other_Eukaryota 172 1.63e-38   NTclustered gi|1002443636|ref|XM_015805198.1| 157538 g47796 i0 90.698 6.38367346938776 129 12 53 0 117 245 1949 1821 Leptomonas pyrrhocoris paraflagellar rod protein 2C mRNA blastn 1564 172 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leptomonas Leptomonas pyrrhocoris
2453118 2453118 PRJNA688736_P_NODE_47062_length_246_cov_0.901734_g46777_i0 PRJNA688736 47062 246 0.901734 2.21826564 Trypanosomatidae 5654 Euglenozoa other_Eukaryota 167 7.61e-37   NTclustered gi|731694902|ref|XM_010700160.1| 5679 g46777 i0 91.057 21.7439024390244 123 11 50 0 1 123 1124 1246 Leishmania panamensis ribosomal protein L3, putative partial mRNA blastn 5349 167 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania panamensis
3218857 3218857 PRJNA688736_P_NODE_40223_length_253_cov_0.866667_g39938_i0 PRJNA688736 40223 253 0.866667 2.19266751 Bodo saltans 75058 Euglenozoa other_Eukaryota 446 9.01e-121   NTclustered gi|206598103|gb|FJ168548.1| 75058 g39938 i0 98.419 130.616600790514 253 4 100 0 1 253 20680 20932 Bodo saltans clone fosmid 14L17, complete sequence blastn 33046 446 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans
21579598 21579598 PRJNA688736_P_NODE_25617_length_314_cov_1.153527_g25332_i0 PRJNA688736 25617 314 1.153527 3.62207478 Leishmania 5658 Euglenozoa other_Eukaryota 185 2.7799999999999993e-42   NTclustered gi|2593249075|emb|OY748415.1| 5660 g25332 i0 82.488 19.0350318471338 217 32 68 5 101 314 625286 625073 Leishmania braziliensis isolate MHOM/BR/75/M2904 genome assembly, chromosome: 21 blastn 5977 185 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania braziliensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;