RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA688736" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA688736 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3218473 3218473 PRJNA688736_P_NODE_23083_length_328_cov_1.890196_g22798_i0 PRJNA688736 23083 328 1.890196 6.19984288 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 355 2.1e-93   NTclustered gi|2621707050|emb|OY764903.1| 2212468 g22798 i0 86.239 237.32012195122 327 45 99 0 2 328 3559342 3559016 MAG: Bryobacteraceae bacterium isolate d7944118-f527-4ba8-a886-cdd3ae4bc3f8 genome assembly, chromosome: 1 blastn 77841 355 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
12146729 12146729 PRJNA688736_P_NODE_14490_length_401_cov_2.009146_g14205_i0 PRJNA688736 14490 401 2.009146 8.05667546 Acidobacteriota bacterium 1978231 Bacteria Bacteria 603 8.459999999999999e-168   NTclustered gi|1958093598|gb|CP065003.1| 1978231 g14205 i0 94.207 317.558603491272 397 20 99 2 1 395 318071 317676 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.185_cln chromosome, complete genome blastn 127341 603 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
15970724 15970724 PRJNA688736_P_NODE_4293_length_691_cov_1.135922_g4027_i0 PRJNA688736 4293 691 1.135922 7.84922102 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 1164 0   NTclustered gi|112980873|gb|DQ829677.1| 171953 g4027 i0 97.106 396 691 19 100 1 1 691 1886 1197 Uncultured Acidobacteria bacterium clone DON3 23S ribosomal RNA gene, partial sequence blastn 273636 1164 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;