RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA688655" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA688655 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1943227 1943227 PRJNA688655_P_NODE_8282_length_251_cov_0.865169_g8217_i0 PRJNA688655 8282 251 0.865169 2.17157419 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 135 2.2e-27   NTclustered gi|2874253779|emb|OY969763.1| 412056 g8217 i0 100 42.4422310756972 73 0 29 0 179 251 4441584 4441656 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.c.2 genome assembly, chromosome: 1 blastn 10653 135 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
4495124 4495124 PRJNA688655_P_NODE_16124_length_241_cov_0.916667_g16059_i0 PRJNA688655 16124 241 0.916667 2.20916747 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 340 4.13e-89   NTclustered gi|2874253768|emb|OY969715.1| 412056 g16059 i0 92.149 236.705394190871 242 17 100 2 1 241 913971 913731 MAG: uncultured Verrucomicrobiae bacterium isolate MFD01916.bin.1.1 genome assembly, chromosome: 1 blastn 57046 340 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
9595818 9595818 PRJNA688655_P_NODE_8528_length_250_cov_0.870056_g8463_i0 PRJNA688655 8528 250 0.870056 2.17514 Luteolibacter ambystomatis 2824561 Bacteria Bacteria 274 4.44e-69   NTclustered gi|2029343589|gb|CP073100.1| 2824561 g8463 i0 87.137 42.1 241 31 96 0 4 244 122915 123155 Luteolibacter ambystomatis strain 32A chromosome, complete genome blastn 10525 274 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter ambystomatis
10871308 10871308 PRJNA688655_P_NODE_9389_length_249_cov_0.875000_g9324_i0 PRJNA688655 9389 249 0.875 2.17875 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 100 7.94e-17   NTclustered gi|2874253779|emb|OY969763.1| 412056 g9324 i0 84.314 0.409638554216867 102 16 41 0 8 109 5092002 5092103 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.c.2 genome assembly, chromosome: 1 blastn 102 100 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
14696186 14696186 PRJNA688655_P_NODE_9632_length_249_cov_0.875000_g9567_i0 PRJNA688655 9632 249 0.875 2.17875 Oleiharenicola sp. Vm1 3398393 Bacteria Bacteria 213 9.77e-51   NTclustered gi|2912653302|gb|CP180537.1| 3398393 g9567 i0 82.186 3.61847389558233 247 44 99 0 1 247 751418 751172 Oleiharenicola sp. Vm1 chromosome, complete genome blastn 901 213 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Oleiharenicola Oleiharenicola sp. Vm1
19794018 19794018 PRJNA688655_P_NODE_11696_length_246_cov_0.890173_g11631_i0 PRJNA688655 11696 246 0.890173 2.18982558 Termitidicoccus mucosus 1184151 Bacteria Bacteria 89.8 1.69e-13   NTclustered gi|2724066732|gb|CP109796.1| 1184151 g11631 i0 84.615 0.626016260162602 91 13 37 1 34 123 1494597 1494507 Termitidicoccus mucosus strain TSB47 chromosome, complete genome blastn 154 89.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Termitidicoccus Termitidicoccus mucosus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;