RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA688655" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA688655 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1943232 1943232 PRJNA688655_P_NODE_8902_length_250_cov_0.870056_g8837_i0 PRJNA688655 8902 250 0.870056 2.17514 Mycoplasmopsis pulmonis 2107 Bacteria Bacteria 462 8.83e-126   NTclustered gi|14089413|emb|AL445563.1| 2107 g8837 i0 100 2 250 0 100 0 1 250 282505 282256 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 1/3 blastn 500 462 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis pulmonis
4495114 4495114 PRJNA688655_P_NODE_1544_length_442_cov_3.401084_g1479_i0 PRJNA688655 1544 442 3.401084 15.03279128 Mycoplasmopsis pulmonis 2107 Bacteria Bacteria 809 0   NTclustered gi|1563796921|emb|LR215008.1| 2107 g1479 i0 99.773 108.201357466063 441 1 99 0 1 441 800294 799854 Mycoplasma pulmonis strain NCTC10139 genome assembly, chromosome: 1 blastn 47825 809 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis pulmonis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;