RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA688655" and tax_clade = "Sar"

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tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA688655 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
667098 667098 PRJNA688655_P_NODE_1201_length_492_cov_2.116945_g1136_i0 PRJNA688655 1201 492 2.116945 10.4153694 Nannochloropsis oceanica 145522 SAR_Eukaryotes SAR_Eukaryotes 165 5.91e-36   NTclustered gi|545906466|ref|NC_022258.1| 145522 g1136 i0 77.663 34.7276422764228 291 51 58 11 35 317 24217 23933 Nannochloropsis oceanica strain CCMP531 mitochondrion, complete genome blastn 17086 165 1 Eukaryota Sar     Eustigmatophyceae Eustigmatales Monodopsidaceae Nannochloropsis Nannochloropsis oceanica
7045758 7045758 PRJNA688655_P_NODE_1506_length_448_cov_1.624000_g1441_i0 PRJNA688655 1506 448 1.624 7.27552 Dinobryon sociale 98061 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.043   NTclustered gi|2445525004|gb|OQ453414.1| 98061 g1441 i0 100 0.5 28 0 6 0 68 95 355 328 Dinobryon sociale strain Daejirangmot_Single small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence blastn 224 52.8 1 Eukaryota Sar     Chrysophyceae Chromulinales Dinobryaceae Dinobryon Dinobryon sociale
12656303 12656303 PRJNA688655_P_NODE_1910_length_404_cov_66.670695_g1845_i0 PRJNA688655 1910 404 66.670695 269.3496078 Opalina 94775 SAR_Eukaryotes SAR_Eukaryotes 78.7 6.39e-10   NTclustered gi|1958638509|gb|MN638758.1| 2017960 g1845 i0 84.524 19.269801980198 84 7 20 5 326 404 3699 3617 Opalina undulata isolate OUFL large subunit ribosomal RNA gene, partial sequence blastn 7785 78.7 1 Eukaryota Sar     Bigyra Opalinata Opalinidae Opalina Opalina undulata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;