RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA688655" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA688655 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18519154 18519154 PRJNA688655_P_NODE_1055_length_521_cov_34.607143_g990_i0 PRJNA688655 1055 521 34.607143 180.30321503 Microglomus paxillus 2977203 Evosea other_Eukaryota 462 1.99e-125   NTclustered gi|2295860781|gb|OP392029.1| 2977203 g990 i0 87.469 29.6065259117083 407 43 77 7 120 521 1762 1359 Microglomus paxillus isolate K-2016-24-1C-4 small subunit ribosomal RNA gene, partial sequence blastn 15425 462 1 Eukaryota Amoebozoa   Evosea Variosea Protosteliida Protosteliaceae Microglomus Microglomus paxillus
19794070 19794070 PRJNA688655_P_NODE_156_length_1246_cov_51.122762_g128_i0 PRJNA688655 156 1246 51.122762 636.98961452 Microglomus paxillus 2977203 Evosea other_Eukaryota 1496 0   NTclustered gi|2295860781|gb|OP392029.1| 2977203 g128 i0 88.596 29.2343499197432 1254 114 100 25 1 1246 14 1246 Microglomus paxillus isolate K-2016-24-1C-4 small subunit ribosomal RNA gene, partial sequence blastn 36426 1496 1 Eukaryota Amoebozoa   Evosea Variosea Protosteliida Protosteliaceae Microglomus Microglomus paxillus
19794137 19794137 PRJNA688655_P_NODE_56_length_1756_cov_52.345217_g39_i0 PRJNA688655 56 1756 52.345217 919.18201052 Mastigamoeba balamuthi 108607 Evosea other_Eukaryota 254 4.62e-62   NTclustered gi|19911164|dbj|AB066364.1| 108607 g39 i0 76.226 32.5222095671982 530 97 29 26 975 1488 1175 1691 Mastigamoeba balamuthi gene for LSU rRNA, partial sequence, clone:MbR2 blastn 57109 254 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Mastigamoebidae Mastigamoeba Mastigamoeba balamuthi
22344567 22344567 PRJNA688655_P_NODE_7118_length_259_cov_1.236559_g7053_i0 PRJNA688655 7118 259 1.236559 3.20268781 Heterostelium album 2086695 Evosea other_Eukaryota 152 2.26e-32   NTclustered gi|1160566576|ref|XM_020580913.1| 670386 g7053 i0 79.452 19.8223938223938 219 42 84 3 34 250 8 225 Polysphondylium pallidum PN500 cyclophilin-type peptidylprolyl cis-trans isomerase (ppiA), partial mRNA blastn 5134 152 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;