RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA688352" and tax_phylum = "Synergistota"

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tax_superkingdom 1

tax_phylum 1

  • Synergistota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA688352 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9595504 9595504 PRJNA688352_P_NODE_9908_length_246_cov_0.890173_g9805_i0 PRJNA688352 9908 246 0.890173 2.18982558 Synergistaceae bacterium 2053624 Bacteria Bacteria 329 9.17e-86   NTclustered gi|2626233883|emb|OY821326.1| 2053624 g9805 i0 91.286 0.979674796747967 241 21 98 0 1 241 2379001 2379241 MAG: Synergistaceae bacterium isolate a20e232d-ae79-494a-a7eb-231c2e3632a3 genome assembly, chromosome: 1 blastn 241 329 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
14695794 14695794 PRJNA688352_P_NODE_10732_length_244_cov_0.900585_g10629_i0 PRJNA688352 10732 244 0.900585 2.1974274 Synergistaceae bacterium 2053624 Bacteria Bacteria 357 4.16e-94   NTclustered gi|2626233883|emb|OY821326.1| 2053624 g10629 i0 94.76 0.938524590163934 229 12 94 0 12 240 2378788 2379016 MAG: Synergistaceae bacterium isolate a20e232d-ae79-494a-a7eb-231c2e3632a3 genome assembly, chromosome: 1 blastn 229 357 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
14695871 14695871 PRJNA688352_P_NODE_9632_length_246_cov_0.890173_g9529_i0 PRJNA688352 9632 246 0.890173 2.18982558 Aminobacterium sp. MB27-C1 3070661 Bacteria Bacteria 65.8 2.85e-6   NTclustered gi|2569590977|gb|CP133089.1| 3070661 g9529 i0 100 68.1991869918699 35 0 14 0 1 35 1313452 1313486 Aminobacterium sp. MB27-C1 chromosome, complete genome blastn 16777 65.8 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Aminobacterium Aminobacterium sp. MB27-C1
21069282 21069282 PRJNA688352_P_NODE_11637_length_242_cov_0.911243_g11534_i0 PRJNA688352 11637 242 0.911243 2.20520806 Pyramidobacter piscolens 638849 Bacteria Bacteria 191 4.43e-44   NTclustered gi|2188906985|dbj|AP025585.1| 638849 g11534 i0 81.172 10.4173553719008 239 43 98 2 4 241 2106080 2106317 Pyramidobacter piscolens CE91-St28 DNA, complete genome blastn 2521 191 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Dethiosulfovibrionaceae Pyramidobacter Pyramidobacter piscolens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;