RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA688352" and tax_phylum = "Nitrospirota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA688352 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9595403 9595403 PRJNA688352_P_NODE_10068_length_245_cov_0.895349_g9965_i0 PRJNA688352 10068 245 0.895349 2.19360505 Nitrospira sp. 70125 Bacteria Bacteria 315 2.55e-81   NTclustered gi|2194428397|gb|CP092079.1| 70125 g9965 i0 89.796 15.2408163265306 245 25 100 0 1 245 3204192 3204436 MAG: Nitrospira sp. isolate UBC3 chromosome blastn 3734 315 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
17244867 17244867 PRJNA688352_P_NODE_8294_length_249_cov_0.875000_g8191_i0 PRJNA688352 8294 249 0.875 2.17875 Nitrospira sp. 70125 Bacteria Bacteria 416 6.939999999999999e-112   NTclustered gi|2194436381|gb|CP092080.1| 70125 g8191 i0 96.787 2.99598393574297 249 8 100 0 1 249 475762 476010 MAG: Nitrospira sp. isolate UBC1 chromosome blastn 746 416 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
22344179 22344179 PRJNA688352_P_NODE_12138_length_241_cov_0.916667_g12035_i0 PRJNA688352 12138 241 0.916667 2.20916747 Nitrospira sp. 70125 Bacteria Bacteria 292 1.17e-74   NTclustered gi|2194428397|gb|CP092079.1| 70125 g12035 i0 89.076 0.987551867219917 238 23 98 3 5 241 234555 234790 MAG: Nitrospira sp. isolate UBC3 chromosome blastn 238 292 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
23619676 23619676 PRJNA688352_P_NODE_10839_length_244_cov_0.900585_g10736_i0 PRJNA688352 10839 244 0.900585 2.1974274 Nitrospira sp. 70125 Bacteria Bacteria 200 7.4299999999999985e-47   NTclustered gi|2290911150|gb|CP060501.1| 70125 g10736 i0 83.333 1.77049180327869 216 36 89 0 29 244 1538116 1537901 MAG: Nitrospira sp. isolate NSFW chromosome, complete genome blastn 432 200 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
23619747 23619747 PRJNA688352_P_NODE_7259_length_251_cov_0.865169_g7156_i0 PRJNA688352 7259 251 0.865169 2.17157419 Nitrospira sp. 70125 Bacteria Bacteria 147 1.01e-30   NTclustered gi|2194428397|gb|CP092079.1| 70125 g7156 i0 81.421 0.729083665338645 183 30 72 4 1 181 435159 434979 MAG: Nitrospira sp. isolate UBC3 chromosome blastn 183 147 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;