RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA688352" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA688352 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
666906 666906 PRJNA688352_P_NODE_7881_length_250_cov_0.870056_g7778_i0 PRJNA688352 7881 250 0.870056 2.17514 Armatimonadota bacterium 2033014 Bacteria Bacteria 169 2.15e-37   NTclustered gi|2108374973|gb|CP070648.1| 2033014 g7778 i0 79.352 2.992 247 45 98 6 7 250 3246759 3246516 MAG: Armatimonadetes bacterium isolate bin88 chromosome blastn 748 169 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
3217731 3217731 PRJNA688352_P_NODE_10603_length_244_cov_0.900585_g10500_i0 PRJNA688352 10603 244 0.900585 2.1974274 uncultured Armatimonadetes bacterium 157466 Bacteria Bacteria 158 4.53e-34   NTclustered gi|2874253689|emb|OY969415.1| 157466 g10500 i0 85.256 17.6475409836066 156 20 63 3 1 154 1201114 1201268 MAG: uncultured Armatimonadetes bacterium isolate MFD00905.bin.2.19 genome assembly, chromosome: 1 blastn 4306 158 1 Bacteria   Bacillati Armatimonadota         uncultured Armatimonadetes bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;