RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA688352" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 2 ✖

bioproject 1

  • PRJNA688352 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10870941 10870941 PRJNA688352_P_NODE_6449_length_261_cov_1.638298_g6346_i0 PRJNA688352 6449 261 1.638298 4.27595778 Lentivirus humimdef1 3418650 Viruses Viruses 305 1.65e-78   NTclustered gi|405794206|gb|JX301000.1| 11676 g6346 i0 87.739 97.6858237547893 261 32 100 0 1 261 636 896 HIV-1 isolate EHR-86004 from Slovakia pol protein gene, partial cds blastn 25496 305 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
24892995 24892995 PRJNA688352_P_NODE_12020_length_241_cov_1.833333_g11917_i0 PRJNA688352 12020 241 1.833333 4.41833253 Lentivirus humimdef1 3418650 Viruses Viruses 235 2.0099999999999997e-57   NTclustered gi|604049710|gb|KF531094.1| 11676 g11917 i0 87.94 16.0165975103734 199 24 83 0 1 199 1425 1623 HIV-1 isolate A/U/A.TZ.2005.209B-23-26 from Tanzania pol protein (pol) gene, partial cds blastn 3860 235 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;