RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA688352" and tax_kingdom = "Orthornavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Orthornavirae · 7 ✖

bioproject 1

  • PRJNA688352 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5005126 5005126 PRJNA688352_P_NODE_4184_length_312_cov_1.184100_g4081_i0 PRJNA688352 4184 312 1.1841 3.694392 Paramyxoviridae 11158 Viruses Viruses 555 1.8199999999999994e-153   NTclustered gi|2721617856|gb|PP711545.1| 251774 g4081 i0 98.718 70.0833333333333 312 4 100 0 1 312 793 482 Porcine parainfluenza virus isolate PPIV-DX-Gansu-2020, partial genome blastn 21866 555 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Rubulavirus Porcine parainfluenza virus
8829734 8829734 PRJNA688352_P_NODE_5847_length_273_cov_1.295000_g5744_i0 PRJNA688352 5847 273 1.295 3.53535 Paramyxoviridae 11158 Viruses Viruses 505 1.6e-138   NTclustered gi|2721617856|gb|PP711545.1| 251774 g5744 i0 100 69 273 0 100 0 1 273 2160 2432 Porcine parainfluenza virus isolate PPIV-DX-Gansu-2020, partial genome blastn 18837 505 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Rubulavirus Porcine parainfluenza virus
15205391 15205391 PRJNA688352_P_NODE_12912_length_214_cov_4.269504_g12809_i0 PRJNA688352 12912 214 4.269504 9.13673856 Paramyxoviridae 11158 Viruses Viruses 396 7.559999999999996e-106   NTclustered gi|9998884|emb|AJ278914.1| 251774 g12809 i0 100 68 214 0 100 0 1 214 614 401 Porcine parainfluenza virus mRNA for membrane protein (m gene) blastn 14552 396 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Rubulavirus Porcine parainfluenza virus
17754560 17754560 PRJNA688352_P_NODE_2394_length_390_cov_0.971609_g2291_i0 PRJNA688352 2394 390 0.971609 3.7892751 Paramyxoviridae 11158 Viruses Viruses 706 0   NTclustered gi|2721617856|gb|PP711545.1| 251774 g2291 i0 99.485 84.574358974359 388 2 99 0 3 390 1281 1668 Porcine parainfluenza virus isolate PPIV-DX-Gansu-2020, partial genome blastn 32984 712 0.991573033707865 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Rubulavirus Porcine parainfluenza virus
22854144 22854144 PRJNA688352_P_NODE_5358_length_282_cov_1.473684_g5255_i0 PRJNA688352 5358 282 1.473684 4.15578888 Paramyxoviridae 11158 Viruses Viruses 521 1.6499999999999996e-143   NTclustered gi|134039021|gb|EF487542.1| 149595 g5255 i0 100 97.5886524822695 282 0 100 0 1 282 1080 799 Canine parainfluenza virus strain FA fusion protein (F) gene, complete cds blastn 27520 521 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae   Canine parainfluenza virus
23619727 23619727 PRJNA688352_P_NODE_4699_length_298_cov_1.360000_g4596_i0 PRJNA688352 4699 298 1.36 4.0528 Orthorubulavirus mammalis 3052558 Viruses Viruses 551 2.239999999999999e-152   NTclustered gi|2449300967|gb|ON241249.1| 2560580 g4596 i0 100 83.996644295302 298 0 100 0 1 298 7566 7269 Mammalian orthorubulavirus 5 isolate ATCC HTB-55 batch no 70037771, complete genome blastn 25031 551 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Orthorubulavirus Orthorubulavirus mammalis
25403248 25403248 PRJNA688352_P_NODE_2120_length_410_cov_1.587537_g2017_i0 PRJNA688352 2120 410 1.587537 6.5089017 Paramyxoviridae 11158 Viruses Viruses 723 0   NTclustered gi|2721617856|gb|PP711545.1| 251774 g2017 i0 98.533 82.7682926829268 409 6 99 0 1 409 826 1234 Porcine parainfluenza virus isolate PPIV-DX-Gansu-2020, partial genome blastn 33935 728 0.993131868131868 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Rubulavirus Porcine parainfluenza virus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;