RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA688352" and tax_clade = "Methanomada group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Methanomada group · 4 ✖

bioproject 1

  • PRJNA688352 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9595423 9595423 PRJNA688352_P_NODE_11688_length_242_cov_0.911243_g11585_i0 PRJNA688352 11688 242 0.911243 2.20520806 Methanobrevibacter ruminantium 83816 Archaea Archaea 294 3.28e-75   NTclustered gi|288541968|gb|CP001719.1| 634498 g11585 i0 88.618 7.01652892561984 246 23 100 5 1 242 504945 505189 Methanobrevibacter ruminantium M1, complete genome blastn 1698 294 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter ruminantium
17244871 17244871 PRJNA688352_P_NODE_8514_length_248_cov_0.880000_g8411_i0 PRJNA688352 8514 248 0.88 2.1824 Methanobacterium formicicum 2162 Archaea Archaea 436 5.3e-118   NTclustered gi|952971377|emb|LN734822.1| 2162 g8411 i0 98.387 3.99193548387097 248 4 100 0 1 248 1375751 1375998 Methanobacterium formicicum genome assembly isolate Mb9, chromosome : I blastn 990 436 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium formicicum
23619758 23619758 PRJNA688352_P_NODE_8299_length_249_cov_0.875000_g8196_i0 PRJNA688352 8299 249 0.875 2.17875 Methanobacterium sp. BAmetb5 2025351 Archaea Archaea 405 1.5e-108   NTclustered gi|1473089901|gb|CP022706.1| 2025351 g8196 i0 95.984 5.16064257028112 249 10 100 0 1 249 1545853 1545605 MAG: Methanobacterium sp. BAmetb5 chromosome, complete genome blastn 1285 405 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp. BAmetb5
25403239 25403239 PRJNA688352_P_NODE_12300_length_241_cov_0.916667_g12197_i0 PRJNA688352 12300 241 0.916667 2.20916747 Methanobacterium 2160 Archaea Archaea 401 1.8699999999999993e-107   NTclustered gi|683509033|emb|LN515531.1| 2162 g12197 i0 96.68 5 241 8 100 0 1 241 1961462 1961222 Methanobacterium formicicum genome assembly, chromosome: chrI blastn 1205 401 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium formicicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;