RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA688157" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 8 ✖

tax_kingdom 1

bioproject 1

  • PRJNA688157 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
666837 666837 PRJNA688157_S_NODE_87321_length_249_cov_1.636364_g87179_i0 PRJNA688157 87321 249 1.636364 4.07454636 Campylobacter jejuni 197 Bacteria Bacteria 344 3.32e-90   NTclustered gi|1226876681|gb|CP022559.1| 197 g87179 i0 91.566 100 249 21 100 0 1 249 699398 699646 Campylobacter jejuni strain 11168H/araE chromosome, complete genome blastn 24900 344 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
5005060 5005060 PRJNA688157_S_NODE_16684_length_405_cov_1.578313_g16542_i0 PRJNA688157 16684 405 1.578313 6.39216765 root 1 Root_unresolved Root_unresolved 294 5.85e-75   NTclustered gi|1226876681|gb|CP022559.1| 197 g16542 i0 82.029 85.1925925925926 345 62 85 0 5 349 699606 699950 Campylobacter jejuni strain 11168H/araE chromosome, complete genome blastn 34503 294 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
6280679 6280679 PRJNA688157_S_NODE_73605_length_265_cov_3.947917_g73463_i0 PRJNA688157 73605 265 3.947917 10.46198005 root 1 Root_unresolved Root_unresolved 165 2.98e-36   NTclustered gi|1226876681|gb|CP022559.1| 197 g73463 i0 85.806 60.2452830188679 155 22 58 0 95 249 699949 699795 Campylobacter jejuni strain 11168H/araE chromosome, complete genome blastn 15965 165 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
10870868 10870868 PRJNA688157_S_NODE_33189_length_342_cov_1.141264_g33047_i0 PRJNA688157 33189 342 1.141264 3.90312288 Campylobacter jejuni 197 Bacteria Bacteria 416 9.949999999999996e-112   NTclustered gi|1226876681|gb|CP022559.1| 197 g33047 i0 88.596 100 342 39 100 0 1 342 699675 699334 Campylobacter jejuni strain 11168H/araE chromosome, complete genome blastn 34200 416 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
17754527 17754527 PRJNA688157_S_NODE_73074_length_266_cov_2.274611_g72932_i0 PRJNA688157 73074 266 2.274611 6.05046526 root 1 Root_unresolved Root_unresolved 403 5.8299999999999995e-108   NTclustered gi|1226876681|gb|CP022559.1| 197 g72932 i0 94.981 97.8947368421053 259 10 96 3 1 256 699497 699239 Campylobacter jejuni strain 11168H/araE chromosome, complete genome blastn 26040 403 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
19793756 19793756 PRJNA688157_S_NODE_9776_length_458_cov_1.615584_g9634_i0 PRJNA688157 9776 458 1.615584 7.39937472 Campylobacter jejuni 197 Bacteria Bacteria 361 6.5e-95   NTclustered gi|1226876681|gb|CP022559.1| 197 g9634 i0 82.598 97.117903930131 408 71 89 0 10 417 699248 699655 Campylobacter jejuni strain 11168H/araE chromosome, complete genome blastn 44480 361 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
20303080 20303080 PRJNA688157_S_NODE_37776_length_330_cov_1.202335_g37634_i0 PRJNA688157 37776 330 1.202335 3.9677055 root 1 Root_unresolved Root_unresolved 411 4.449999999999999e-110   NTclustered gi|1226876681|gb|CP022559.1| 197 g37634 i0 89.091 100 330 36 100 0 1 330 699846 699517 Campylobacter jejuni strain 11168H/araE chromosome, complete genome blastn 33000 411 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
25403206 25403206 PRJNA688157_S_NODE_23580_length_373_cov_2.060000_g23438_i0 PRJNA688157 23580 373 2.06 7.6838 root 1 Root_unresolved Root_unresolved 294 5.34e-75   NTclustered gi|1226876681|gb|CP022559.1| 197 g23438 i0 88.211 66.0160857908847 246 29 66 0 128 373 699953 699708 Campylobacter jejuni strain 11168H/araE chromosome, complete genome blastn 24624 296 0.993243243243243 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;