RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA688157" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA688157 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2451965 2451965 PRJNA688157_S_NODE_46702_length_310_cov_1.949367_g46560_i0 PRJNA688157 46702 310 1.949367 6.0430377 Staphylococcus 1279 Bacteria Bacteria 542 1.41e-149   NTclustered gi|1176884116|gb|CP020463.1| 1282 g46560 i0 98.693 98.7096774193548 306 3 99 1 5 310 1695513 1695817 Staphylococcus epidermidis strain 1457 chromosome, complete genome blastn 30600 542 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus epidermidis
15969529 15969529 PRJNA688157_S_NODE_55673_length_293_cov_3.095455_g55531_i0 PRJNA688157 55673 293 3.095455 9.06968315 Staphylococcus epidermidis 1282 Bacteria Bacteria 542 1.32e-149   NTclustered gi|2340609366|gb|CP111111.1| 1282 g55531 i0 100 114.160409556314 293 0 100 0 1 293 1696646 1696938 Staphylococcus epidermidis strain KCTC 13172 chromosome, complete genome blastn 33449 542 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus epidermidis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;