RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA688157" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA688157 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3217721 3217721 PRJNA688157_S_NODE_52463_length_299_cov_1.743363_g52321_i0 PRJNA688157 52463 299 1.743363 5.21265537 Rothia aeria 172042 Bacteria Bacteria 553 6.25e-153   NTclustered gi|1540157972|emb|LR134479.1| 172042 g52321 i0 100 320.759197324415 299 0 100 0 1 299 804098 803800 Rothia aeria strain NCTC10207 genome assembly, chromosome: 1 blastn 95907 553 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Rothia Rothia aeria
12656128 12656128 PRJNA688157_S_NODE_89390_length_247_cov_2.678161_g89248_i0 PRJNA688157 89390 247 2.678161 6.61505767 Cutibacterium 1912216 Bacteria Bacteria 457 4.05e-124   NTclustered gi|1446500593|gb|CP031442.1| 1747 g89248 i0 100 262.226720647773 247 0 100 0 1 247 55671 55917 Cutibacterium acnes strain KCOM 1315 chromosome, complete genome blastn 64770 457 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
13930662 13930662 PRJNA688157_S_NODE_77211_length_260_cov_3.620321_g77069_i0 PRJNA688157 77211 260 3.620321 9.4128346 Cutibacterium 1912216 Bacteria Bacteria 481 2.55e-131   NTclustered gi|1446500593|gb|CP031442.1| 1747 g77069 i0 100 262.023076923077 260 0 100 0 1 260 56354 56613 Cutibacterium acnes strain KCOM 1315 chromosome, complete genome blastn 68126 481 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
22854081 22854081 PRJNA688157_S_NODE_54478_length_295_cov_3.337838_g54336_i0 PRJNA688157 54478 295 3.337838 9.8466221 Cutibacterium 1912216 Bacteria Bacteria 540 4.79e-149   NTclustered gi|966542502|gb|CP012354.1| 1747 g54336 i0 99.661 53.2305084745763 295 1 100 0 1 295 1943008 1943302 Cutibacterium acnes strain PA_12_1_L1 chromosome, complete genome blastn 15703 540 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;