RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA685607" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA685607 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5769992 5769992 PRJNA685607_P_NODE_67785_length_250_cov_0.870056_g67426_i0 PRJNA685607 67785 250 0.870056 2.17514 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 169 2.15e-37   NTclustered gi|673019533|ref|XM_008865506.1| 157072 g67426 i0 90 17.532 130 13 52 0 111 240 107 236 Aphanomyces invadans hypothetical protein mRNA blastn 4383 169 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
14695209 14695209 PRJNA685607_P_NODE_19032_length_383_cov_1.248387_g18674_i0 PRJNA685607 19032 383 1.248387 4.78132221 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 303 9.14e-78   NTclustered gi|2795016949|ref|XM_067930458.1| 4785 g18674 i0 81.201 63.1566579634465 383 66 99 6 4 383 502 881 Phytophthora cinnamomi protein transporter Sec61 subunit alpha isoform 2 (IUM83_06269), partial mRNA blastn 24189 303 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
14695354 14695354 PRJNA685607_P_NODE_70212_length_249_cov_1.312500_g69853_i0 PRJNA685607 70212 249 1.3125 3.268125 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 108 4.74e-19   NTclustered gi|813201974|ref|XM_012354388.1| 695850 g69853 i0 84.404 3.18875502008032 109 17 44 0 91 199 80 188 Saprolegnia parasitica CBS 223.65 ATP synthase F1 mRNA blastn 794 108 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
17244207 17244207 PRJNA685607_P_NODE_14774_length_421_cov_1.295977_g14416_i0 PRJNA685607 14774 421 1.295977 5.45606317 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 241 8.06e-59   NTclustered gi|669153141|ref|XM_008613911.1| 1156394 g14416 i0 83.209 37.3372921615202 268 39 63 5 152 416 213 477 Saprolegnia diclina VS20 60S ribosomal protein mRNA blastn 15719 241 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
24128074 24128074 PRJNA685607_P_NODE_12319_length_453_cov_1.513158_g11961_i0 PRJNA685607 12319 453 1.513158 6.85460574 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 224 8.789999999999999e-54   NTclustered gi|1111669769|ref|NC_032052.1| 157072 g11961 i0 82.397 62.2317880794702 267 37 58 7 6 267 1170 1431 Aphanomyces invadans isolate NJM9701 mitochondrion, complete genome blastn 28191 226 0.991150442477876 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
24892617 24892617 PRJNA685607_P_NODE_9380_length_507_cov_2.629032_g9024_i0 PRJNA685607 9380 507 2.629032 13.32919224 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 499 1.4699999999999999e-136   NTclustered gi|166034947|emb|CU349173.1| 100861 g9024 i0 86.937 87.8658777120316 444 58 88 0 7 450 536 93 Aphanomyces euteiches cDNA blastn 44548 499 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;