RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA685607" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA685607 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9594844 9594844 PRJNA685607_P_NODE_14548_length_423_cov_1.788571_g14190_i0 PRJNA685607 14548 423 1.788571 7.56565533 Pristionchus pauli 376545 Nematoda Nematoda 278 6.180000000000001e-70   NTclustered gi|150982019|gb|EF634598.1| 376545 g14190 i0 81.197 5.3096926713948 351 60 82 6 10 357 384 37 Pristionchus pauli large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 2246 278 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pauli
17244224 17244224 PRJNA685607_P_NODE_21174_length_369_cov_1.560811_g20815_i0 PRJNA685607 21174 369 1.560811 5.75939259 Strongyloides ratti 34506 Nematoda Nematoda 300 1.13e-76   NTclustered gi|1376147859|ref|XM_024654603.1| 34506 g20815 i0 82.456 125.859078590786 342 60 93 0 1 342 342 1 Strongyloides ratti Polyubiquitin-C (SRAE_2000341300), partial mRNA blastn 46442 300 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
23619221 23619221 PRJNA685607_P_NODE_59879_length_259_cov_4.451613_g59520_i0 PRJNA685607 59879 259 4.451613 11.52967767 Caenorhabditis briggsae 6238 Nematoda Nematoda 224 4.72e-54   NTclustered gi|268537031|ref|XM_002633606.1| 6238 g59520 i0 87.565 69.046332046332 193 24 75 0 1 193 247 55 Caenorhabditis briggsae Protein CBR-RPS-23 (Cbr-rps-23), partial mRNA blastn 17883 224 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;