RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA685607" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA685607 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10870341 10870341 PRJNA685607_P_NODE_51749_length_275_cov_0.915842_g51390_i0 PRJNA685607 51749 275 0.915842 2.5185655 Littorina saxatilis 31220 Mollusca Mollusca 171 6.69e-38   NTclustered gi|2868636719|ref|XM_070321030.1| 31220 g51390 i0 83.246 62.64 191 26 68 4 2 189 392 205 PREDICTED: Littorina saxatilis small ribosomal subunit protein uS7 (LOC138949251), mRNA blastn 17226 171 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Littorinimorpha Littorinidae Littorina Littorina saxatilis
17754349 17754349 PRJNA685607_P_NODE_94154_length_241_cov_1.833333_g93795_i0 PRJNA685607 94154 241 1.833333 4.41833253 root 1 Root_unresolved Root_unresolved 52.8 0.022   NTclustered gi|2245649317|ref|XM_046488772.2| 6454 g93795 i0 96.774 1.32780082987552 31 1 13 0 128 158 1224 1194 PREDICTED: Haliotis rufescens uncharacterized LOC124125454 (LOC124125454), transcript variant X3, mRNA blastn 320 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Lepetellida Haliotidae Haliotis Haliotis rufescens
22343638 22343638 PRJNA685607_P_NODE_57038_length_265_cov_0.895833_g56679_i0 PRJNA685607 57038 265 0.895833 2.37395745 Aplysia californica 6500 Mollusca Mollusca 202 2.27e-47   NTclustered gi|1897914720|ref|XM_013091443.2| 6500 g56679 i0 87.861 63.6603773584906 173 19 65 2 30 201 1425 1254 PREDICTED: Aplysia californica tubulin alpha-1A chain (LOC101853836), mRNA blastn 16870 202 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Aplysiida Aplysiidae Aplysia Aplysia californica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;