RNAquarium Metadata Server
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contig_metadata

9 rows where analysis = "blastn", bioproject = "PRJNA685607" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 9 ✖

tax_clade 1

bioproject 1

  • PRJNA685607 · 9 ✖

analysis 1

  • blastn · 9 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3217242 3217242 PRJNA685607_P_NODE_54623_length_269_cov_1.561224_g54264_i0 PRJNA685607 54623 269 1.561224 4.19969256 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 438 1.6199999999999996e-118   NTclustered gi|290995331|ref|XM_002680203.1| 5762 g54264 i0 96.255 3.88475836431227 267 10 99 0 1 267 202 468 Naegleria gruberi 60S ribosomal protein L21 (NAEGRDRAFT_78822), mRNA blastn 1045 438 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
13420452 13420452 PRJNA685607_P_NODE_92791_length_242_cov_0.911243_g92432_i0 PRJNA685607 92791 242 0.911243 2.20520806 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 191 4.43e-44   NTclustered gi|290972987|ref|XM_002669186.1| 5762 g92432 i0 81.739 3.92148760330579 230 40 95 2 1 229 263 35 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_56405), mRNA blastn 949 191 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
14695421 14695421 PRJNA685607_P_NODE_8272_length_537_cov_1.788793_g7917_i0 PRJNA685607 8272 537 1.788793 9.60581841 Percolomonas cosmopolitus 63605 Heterolobosea other_Eukaryota 560 7.09e-155   NTclustered gi|33089879|gb|AY283748.1| 63605 g7917 i0 86.127 97.4599627560521 519 72 97 0 19 537 781 263 Percolomonas cosmopolitus isolate Gym67_1 actin gene, partial cds blastn 52336 560 1 Eukaryota Discoba   Heterolobosea     Percolomonadidae Percolomonas Percolomonas cosmopolitus
15969075 15969075 PRJNA685607_P_NODE_62433_length_255_cov_1.269231_g62074_i0 PRJNA685607 62433 255 1.269231 3.23653905 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 237 5.96e-58   NTclustered gi|290997451|ref|XM_002681249.1| 5762 g62074 i0 85.043 0.917647058823529 234 33 91 2 2 234 419 187 Naegleria gruberi S-phase kinase-associated protein (NAEGRDRAFT_82963), mRNA blastn 234 237 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
17244282 17244282 PRJNA685607_P_NODE_45354_length_288_cov_0.902326_g44995_i0 PRJNA685607 45354 288 0.902326 2.59869888 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 189 1.95e-43   NTclustered gi|290983699|ref|XM_002674520.1| 5762 g44995 i0 83.838 0.6875 198 32 69 0 1 198 295 98 Naegleria gruberi rab family small GTPase (NAEGRDRAFT_80594), mRNA blastn 198 189 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
19793405 19793405 PRJNA685607_P_NODE_85956_length_244_cov_0.900585_g85597_i0 PRJNA685607 85956 244 0.900585 2.1974274 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 327 3.27e-85   NTclustered gi|290985452|ref|XM_002675394.1| 5762 g85597 i0 90.984 1 244 20 99 2 2 244 616 374 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_69403), partial mRNA blastn 244 327 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
22343512 22343512 PRJNA685607_P_NODE_11918_length_459_cov_1.404145_g11561_i0 PRJNA685607 11918 459 1.404145 6.44502555 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 383 1.3899999999999995e-101   NTclustered gi|2031924593|emb|OD955803.1| 5763 g11561 i0 81.739 93.5555555555556 460 82 100 2 1 459 5271 5729 Naegleria fowleri Karachi_NF001 strain blastn 42942 383 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
22343523 22343523 PRJNA685607_P_NODE_1578_length_1297_cov_3.937092_g1392_i0 PRJNA685607 1578 1297 3.937092 51.06408324 Acrasis rosea 43695 Heterolobosea other_Eukaryota 1199 0   NTclustered gi|12083876|gb|AF190771.1|AF190771 43695 g1392 i0 84.866 59.9282960678489 1196 173 92 8 14 1205 1204 13 Acrasis rosea elongation factor 1 alpha (tef1) gene, partial cds blastn 77727 1199 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis rosea
23619108 23619108 PRJNA685607_P_NODE_15879_length_409_cov_1.446429_g15521_i0 PRJNA685607 15879 409 1.446429 5.91589461 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 259 2.16e-64   NTclustered gi|290995758|ref|XM_002680404.1| 5762 g15521 i0 81.098 14.6601466992665 328 58 95 4 77 402 844 519 Naegleria gruberi mitochondrial F-1-ATPase subunit (NAEGRDRAFT_77267), mRNA blastn 5996 259 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;