RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA685607" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA685607 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
666254 666254 PRJNA685607_P_NODE_13241_length_439_cov_1.967213_g12883_i0 PRJNA685607 13241 439 1.967213 8.63606507 Vorticella sp. 4 JG-2011 1295638 SAR_Eukaryotes SAR_Eukaryotes 756 0   NTclustered gi|512134943|gb|JX178902.1| 1295638 g12883 i0 97.936 93.8952164009112 436 9 99 0 4 439 1449 1014 Vorticella sp. 4 JG-2011 clone 2 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 41220 756 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Vorticellidae Vorticella Vorticella sp. 4 JG-2011
1942373 1942373 PRJNA685607_P_NODE_67342_length_250_cov_1.553672_g66983_i0 PRJNA685607 67342 250 1.553672 3.88418 Chilodonella uncinata 151077 SAR_Eukaryotes SAR_Eukaryotes 401 1.9499999999999994e-107   NTclustered gi|300676714|gb|GQ377691.1| 151077 g66983 i0 95.6 13.088 250 11 100 0 1 250 136 385 Chilodonella uncinata rps22a (rps22a) mRNA, complete cds blastn 3272 401 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella uncinata
9594944 9594944 PRJNA685607_P_NODE_54828_length_269_cov_1.178571_g54469_i0 PRJNA685607 54828 269 1.178571 3.17035599 Chilodonella hexasticha 1938391 SAR_Eukaryotes SAR_Eukaryotes 468 2.06e-127   NTclustered gi|1389430805|gb|MH341633.1| 1938391 g54469 i0 98.134 77.5353159851301 268 5 99 0 2 269 2275 2008 Chilodonella hexasticha strain C.hexasticha AS large subunit ribosomal RNA gene, partial sequence blastn 20857 468 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella hexasticha
12145581 12145581 PRJNA685607_P_NODE_19810_length_377_cov_23.996711_g19452_i0 PRJNA685607 19810 377 23.996711 90.46760047 Chilodonella piscicola 1654720 SAR_Eukaryotes SAR_Eukaryotes 586 7.959999999999997e-163   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g19452 i0 94.709 96.1352785145889 378 18 100 2 1 377 386 10 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 36243 586 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
21068821 21068821 PRJNA685607_P_NODE_67297_length_250_cov_1.683616_g66938_i0 PRJNA685607 67297 250 1.683616 4.20904 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 115 2.85e-21   NTclustered gi|829192014|ref|XM_012799966.1| 312017 g66938 i0 88.421 1.68 95 11 38 0 48 142 125 219 Tetrahymena thermophila SB210 hypothetical protein partial mRNA blastn 420 115 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
24892414 24892414 PRJNA685607_P_NODE_34600_length_315_cov_1.272727_g34241_i0 PRJNA685607 34600 315 1.272727 4.00909005 Sterkiella nova 200597 SAR_Eukaryotes SAR_Eukaryotes 209 1.65e-49   NTclustered gi|1051275|gb|U37280.1|ONU37280 200597 g34241 i0 80.068 76.3746031746032 296 48 91 7 9 296 1810 1518 Oxytricha nova Hsp70 gene, complete cds blastn 24058 209 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Sterkiella Sterkiella nova

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;