RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA685607" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA685607 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8829408 8829408 PRJNA685607_P_NODE_72007_length_249_cov_0.875000_g71648_i0 PRJNA685607 72007 249 0.875 2.17875 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 217 7.55e-52   NTclustered gi|6138832|emb|AJ133813.1| 36329 g71648 i0 90.741 98.421686746988 162 15 65 0 83 244 982 821 Plasmodium falciparum pub gene, exons 1-2 blastn 24507 217 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
13420210 13420210 PRJNA685607_P_NODE_2031_length_1130_cov_3.278146_g1810_i0 PRJNA685607 2031 1130 3.278146 37.0430498 Plasmodium falciparum 5833 SAR_Eukaryotes SAR_Eukaryotes 771 0   NTclustered gi|124806844|ref|XM_001350811.1| 36329 g1810 i0 79.412 92.0132743362832 1122 207 98 20 21 1130 9 1118 Plasmodium falciparum 3D7 actin I (PF3D7_1246200), partial mRNA blastn 103975 771 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
18518512 18518512 PRJNA685607_P_NODE_74375_length_248_cov_0.880000_g74016_i0 PRJNA685607 74375 248 0.88 2.1824 Eimeria necatrix 51315 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.022   NTclustered gi|921124553|ref|XM_013581433.1| 51315 g74016 i0 100 0.112903225806452 28 0 11 0 169 196 2078 2105 Eimeria necatrix hypothetical protein, conserved partial mRNA blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria necatrix
19793316 19793316 PRJNA685607_P_NODE_66276_length_251_cov_0.865169_g65917_i0 PRJNA685607 66276 251 0.865169 2.17157419 Theileria equi 5872 SAR_Eukaryotes SAR_Eukaryotes 69.4 2.26e-7   NTclustered gi|510907572|ref|XM_004831870.1| 1537102 g65917 i0 93.478 0.183266932270916 46 3 18 0 1 46 441 486 Theileria equi strain WA 60S ribosomal protein L19, putative (BEWA_049420), mRNA blastn 46 69.4 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Theileriidae Theileria Theileria equi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;