RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA685607" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 4 ✖

bioproject 1

  • PRJNA685607 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1942408 1942408 PRJNA685607_P_NODE_74482_length_248_cov_0.880000_g74123_i0 PRJNA685607 74482 248 0.88 2.1824 Thecamonas trahens 529818 Root_unresolved Root_unresolved 254 5.73e-63   NTclustered gi|923130274|ref|XM_013903149.1| 461836 g74123 i0 88.942 84.7056451612903 208 19 83 4 3 208 258 53 Thecamonas trahens ATCC 50062 14-3-3 family protein epsilon (AMSG_04940), partial mRNA blastn 21007 254 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
4494388 4494388 PRJNA685607_P_NODE_82864_length_245_cov_0.895349_g82505_i0 PRJNA685607 82864 245 0.895349 2.19360505 Thecamonas trahens 529818 Root_unresolved Root_unresolved 169 2.1e-37   NTclustered gi|923133140|ref|XM_013904582.1| 461836 g82505 i0 88.489 51.5755102040816 139 16 57 0 1 139 139 1 Thecamonas trahens ATCC 50062 Ras-like protein rasG (AMSG_03185), partial mRNA blastn 12636 169 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
15969040 15969040 PRJNA685607_P_NODE_52713_length_273_cov_1.155000_g52354_i0 PRJNA685607 52713 273 1.155 3.15315 Thecamonas trahens 529818 Root_unresolved Root_unresolved 108 5.27e-19   NTclustered gi|923122061|ref|XM_013899047.1| 461836 g52354 i0 88.764 0.538461538461538 89 8 32 2 179 266 719 632 Thecamonas trahens ATCC 50062 40S ribosomal protein S1 (AMSG_08716), mRNA blastn 147 108 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
21068940 21068940 PRJNA685607_P_NODE_9337_length_508_cov_2.848276_g8981_i0 PRJNA685607 9337 508 2.848276 14.46924208 Thecamonas trahens 529818 Root_unresolved Root_unresolved 257 9.81e-64   NTclustered gi|923134252|ref|XM_013905138.1| 461836 g8981 i0 78.52 31.2952755905512 419 70 80 15 1 406 609 198 Thecamonas trahens ATCC 50062 adenine nucleotide translocator (AMSG_02751), mRNA blastn 15898 257 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;