RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA685060" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA685060 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3216996 3216996 PRJNA685060_P_NODE_12003_length_269_cov_1.178571_g11913_i0 PRJNA685060 12003 269 1.178571 3.17035599 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 433 7.53e-117   NTclustered gi|2874254096|emb|OY970179.1| 412056 g11913 i0 97.255 161.371747211896 255 7 95 0 1 255 557890 558144 MAG: uncultured Verrucomicrobiae bacterium isolate MFD05521.bin.c.1 genome assembly, chromosome: 1 blastn 43409 433 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
23619080 23619080 PRJNA685060_P_NODE_8719_length_322_cov_1.176707_g8629_i0 PRJNA685060 8719 322 1.176707 3.78899654 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 444 4.27e-120   NTclustered gi|2874254040|emb|OY970364.1| 412056 g8629 i0 91.615 111.673913043478 322 25 99 2 1 321 2167879 2168199 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04463.bin.c.15 genome assembly, chromosome: 1 blastn 35959 444 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;