RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA685060" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA685060 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1176065 1176065 PRJNA685060_P_NODE_7261_length_353_cov_2.475000_g7171_i0 PRJNA685060 7261 353 2.475 8.73675 Metazoa 33208 Platyhelminthes Platyhelminthes 651 0   NTclustered gi|60687563|gb|AY914894.1| 6182 g7171 i0 100 99.7167138810198 352 0 99 0 2 353 129 480 Schistosoma japonicum unknown mRNA blastn 35200 651 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
15968925 15968925 PRJNA685060_P_NODE_8993_length_316_cov_2.427984_g8903_i0 PRJNA685060 8993 316 2.427984 7.67242944 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 52.8 0.03   NTclustered gi|690482098|emb|LN024774.1| 99802 g8903 i0 100 0.0886075949367089 28 0 9 0 200 227 6654 6681 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei ,scaffold SPER_scaffold0024345 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
24892340 24892340 PRJNA685060_P_NODE_8060_length_335_cov_1.175573_g7970_i0 PRJNA685060 8060 335 1.175573 3.93816955 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 54.7 0.009   NTclustered gi|690652912|emb|LN201090.1| 99802 g7970 i0 92.105 0.791044776119403 38 3 11 0 178 215 148 185 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei ,scaffold SPER_scaffold0171086 blastn 265 54.7 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;