RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA685060" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA685060 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10104676 10104676 PRJNA685060_P_NODE_14008_length_250_cov_0.870056_g13918_i0 PRJNA685060 14008 250 0.870056 2.17514 Mycoplasma 2093 Bacteria Bacteria 84.2 8.03e-12   NTclustered gi|2040452726|gb|CP074573.1| 2231116 g13918 i0 80.909 7.644 110 17 43 4 87 193 1703941 1703833 Tenericutes bacterium strain zrk4 chromosome, complete genome blastn 1911 84.2 1 Bacteria   Bacillati Mycoplasmatota         Mycoplasmatota bacterium
13420096 13420096 PRJNA685060_P_NODE_14811_length_248_cov_0.880000_g14721_i0 PRJNA685060 14811 248 0.88 2.1824 Mesoplasma coleopterae 324078 Bacteria Bacteria 97.1 1.02e-15   NTclustered gi|1359435478|gb|CP022510.1| 324078 g14721 i0 76.166 2.53629032258065 193 40 77 6 1 190 296301 296112 Mesoplasma coleopterae strain BARC 786 chromosome blastn 629 97.1 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Entomoplasmataceae Mesoplasma Mesoplasma coleopterae
22343424 22343424 PRJNA685060_P_NODE_15158_length_247_cov_0.885057_g15068_i0 PRJNA685060 15158 247 0.885057 2.18609079 Malacoplasma penetrans 28227 Bacteria Bacteria 302 2.01e-77   NTclustered gi|47118307|dbj|BA000026.2| 272633 g15068 i0 89.496 72.0080971659919 238 25 96 0 9 246 94843 95080 Mycoplasma penetrans HF-2 DNA, complete genome blastn 17786 302 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Mycoplasmoidaceae Malacoplasma Malacoplasma penetrans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;