RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA685060" and tax_clade = "PVC group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA685060 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3216996 3216996 PRJNA685060_P_NODE_12003_length_269_cov_1.178571_g11913_i0 PRJNA685060 12003 269 1.178571 3.17035599 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 433 7.53e-117   NTclustered gi|2874254096|emb|OY970179.1| 412056 g11913 i0 97.255 161.371747211896 255 7 95 0 1 255 557890 558144 MAG: uncultured Verrucomicrobiae bacterium isolate MFD05521.bin.c.1 genome assembly, chromosome: 1 blastn 43409 433 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
10870126 10870126 PRJNA685060_P_NODE_11269_length_279_cov_1.495146_g11179_i0 PRJNA685060 11269 279 1.495146 4.17145734 uncultured Chlamydiales bacterium 174324 Bacteria Bacteria 446 1.01e-120   NTclustered gi|18029206|gb|AF364577.1| 174324 g11179 i0 95.668 101.046594982079 277 12 99 0 3 279 1 277 Uncultured Chlamydiales bacterium clone P-11 16S ribosomal RNA gene, partial sequence blastn 28192 446 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     uncultured Chlamydiales bacterium
12145467 12145467 PRJNA685060_P_NODE_12970_length_255_cov_2.274725_g12880_i0 PRJNA685060 12970 255 2.274725 5.80054875 Phycisphaeraceae bacterium D3-23 3004190 Bacteria Bacteria 145 3.7199999999999995e-30   NTclustered gi|2727577647|gb|CP114179.1| 3004190 g12880 i0 78.205 2.0078431372549 234 45 91 5 1 231 4074611 4074841 Phycisphaeraceae bacterium D3-23 chromosome, complete genome blastn 512 145 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales Phycisphaeraceae   Phycisphaeraceae bacterium D3-23
23619080 23619080 PRJNA685060_P_NODE_8719_length_322_cov_1.176707_g8629_i0 PRJNA685060 8719 322 1.176707 3.78899654 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 444 4.27e-120   NTclustered gi|2874254040|emb|OY970364.1| 412056 g8629 i0 91.615 111.673913043478 322 25 99 2 1 321 2167879 2168199 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04463.bin.c.15 genome assembly, chromosome: 1 blastn 35959 444 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;