RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA683902" and tax_superkingdom = "Archaea"

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tax_superkingdom 1

  • Archaea · 3 ✖

tax_phylum 1

tax_kingdom 1

bioproject 1

  • PRJNA683902 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
665375 665375 PRJNA683902_S_NODE_34961_length_162_cov_1.832000_g34517_i0 PRJNA683902 34961 162 1.832 2.96784 Vulcanisaeta moutnovskia 985052 Archaea Archaea 52.8 0.013   NTclustered gi|323706731|gb|CP002529.1| 985053 g34517 i0 100 0.172839506172839 28 0 17 0 129 156 336100 336127 Vulcanisaeta moutnovskia 768-28, complete genome blastn 28 52.8 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Vulcanisaeta Vulcanisaeta moutnovskia
1941379 1941379 PRJNA683902_S_NODE_39902_length_150_cov_2.380531_g39458_i0 PRJNA683902 39902 150 2.380531 3.5707965 uncultured archaeon 115547 Archaea Archaea 87.9 3.35e-13   NTclustered gi|254971782|gb|GQ340388.1| 115547 g39458 i0 93.22 4.72666666666667 59 4 39 0 6 64 435 377 Uncultured archaeon clone B08-21-ARC 16S ribosomal RNA gene, partial sequence blastn 709 87.9 1 Archaea               uncultured archaeon
8318418 8318418 PRJNA683902_S_NODE_20987_length_229_cov_4.609375_g20543_i0 PRJNA683902 20987 229 4.609375 10.55546875 Vulcanisaeta moutnovskia 985052 Archaea Archaea 52.8 0.02   NTclustered gi|323706731|gb|CP002529.1| 985053 g20543 i0 100 0.122270742358079 28 0 12 0 74 101 336127 336100 Vulcanisaeta moutnovskia 768-28, complete genome blastn 28 52.8 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Vulcanisaeta Vulcanisaeta moutnovskia

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;