RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA683902" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA683902 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2450823 2450823 PRJNA683902_S_NODE_29322_length_181_cov_1.798611_g28878_i0 PRJNA683902 29322 181 1.798611 3.25548591 Phaeodactylum 2849 SAR_Eukaryotes SAR_Eukaryotes 82.4 1.96e-11   NTclustered gi|58000531|gb|AC151918.2| 2850 g28878 i0 82.105 1.04972375690608 95 17 52 0 18 112 25639 25545 Phaeodactylum tricornutum clone JGIAHOK-13P10, complete sequence blastn 190 82.4 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
7553201 7553201 PRJNA683902_S_NODE_19866_length_239_cov_10.905941_g19422_i0 PRJNA683902 19866 239 10.905941 26.06519899 Bacillariophyta 2836 SAR_Eukaryotes SAR_Eukaryotes 401 1.8499999999999992e-107   NTclustered gi|1783235058|gb|MN276191.1| 210602 g19422 i0 97.071 198.970711297071 239 6 99 1 1 238 97316 97554 Nanofrustulum shiloi strain SZCZM404 chloroplast, complete genome blastn 47554 401 1 Eukaryota Sar   Bacillariophyta Fragilariophyceae Fragilariales Staurosiraceae Nanofrustulum Nanofrustulum shiloi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;