RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA683902" and tax_kingdom = "Fusobacteriati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 5 ✖

bioproject 1

  • PRJNA683902 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12654750 12654750 PRJNA683902_S_NODE_21310_length_226_cov_28.693122_g20866_i0 PRJNA683902 21310 226 28.693122 64.84645572 Cetobacterium 180162 Bacteria Bacteria 418 1.7199999999999998e-112   NTclustered gi|2865368125|gb|CP122294.1| 188913 g20866 i0 100 537.641592920354 226 0 100 0 1 226 280771 280546 Cetobacterium somerae strain MSU41 plasmid p41_t2, complete sequence blastn 121507 418 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
15967970 15967970 PRJNA683902_S_NODE_22413_length_219_cov_1.879121_g21969_i0 PRJNA683902 22413 219 1.879121 4.11527499 Cetobacterium somerae 188913 Bacteria Bacteria 340 3.69e-89   NTclustered gi|2666488225|gb|CP143319.1| 188913 g21969 i0 94.931 47.8812785388128 217 11 99 0 3 219 67296 67512 Cetobacterium somerae strain ceto chromosome, complete genome blastn 10486 340 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
16478235 16478235 PRJNA683902_S_NODE_25493_length_200_cov_1.595092_g25049_i0 PRJNA683902 25493 200 1.595092 3.190184 Fusobacterium 848 Bacteria Bacteria 364 1.96e-96   NTclustered gi|2445153921|gb|CP117797.1| 851 g25049 i0 99.5 496.11 200 1 100 0 1 200 469764 469963 Fusobacterium nucleatum strain FNA chromosome, complete genome blastn 99222 364 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
17752947 17752947 PRJNA683902_S_NODE_13334_length_341_cov_155.786184_g12890_i0 PRJNA683902 13334 341 155.786184 531.23088744 Cetobacterium 180162 Bacteria Bacteria 619 7.039999999999999e-173   NTclustered gi|2666488225|gb|CP143319.1| 188913 g12890 i0 99.413 499.070381231672 341 2 100 0 1 341 1804676 1805016 Cetobacterium somerae strain ceto chromosome, complete genome blastn 170183 625 0.9904 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
24891571 24891571 PRJNA683902_S_NODE_8200_length_574_cov_31.016760_g7791_i0 PRJNA683902 8200 574 31.01676 178.0362024 Cetobacterium somerae 188913 Bacteria Bacteria 1026 0   NTclustered gi|2201062197|gb|CP092519.1| 188913 g7791 i0 98.955 510.533101045296 574 5 100 1 1 574 49424 48852 Cetobacterium somerae strain CS2105-BJ chromosome, complete genome blastn 293046 1026 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;