RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA683902" and tax_clade = "Bacteria candidate phyla"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA683902 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17243233 17243233 PRJNA683902_S_NODE_26314_length_195_cov_3.379747_g25870_i0 PRJNA683902 26314 195 3.379747 6.59050665 Candidatus Mycosynbacter amalyticus 2665156 Bacteria Bacteria 296 7.05e-76   NTclustered gi|1799615131|gb|CP045921.1| 2665156 g25870 i0 96.648 60.7230769230769 179 4 91 2 18 195 221725 221548 Candidatus Mycosynbacter amalyticus isolate JR1 chromosome, complete genome blastn 11841 296 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota       Candidatus Mycosynbacter Candidatus Mycosynbacter amalyticus
17243330 17243330 PRJNA683902_S_NODE_38414_length_153_cov_3.629310_g37970_i0 PRJNA683902 38414 153 3.62931 5.5528443 Candidatus Mycosynbacter amalyticus 2665156 Bacteria Bacteria 246 5.36e-61   NTclustered gi|1799615131|gb|CP045921.1| 2665156 g37970 i0 97.241 110.450980392157 145 4 95 0 1 145 220544 220688 Candidatus Mycosynbacter amalyticus isolate JR1 chromosome, complete genome blastn 16899 246 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota       Candidatus Mycosynbacter Candidatus Mycosynbacter amalyticus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;