RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA683669" and tax_phylum = "Verrucomicrobiota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA683669 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1941005 1941005 PRJNA683669_P_NODE_30542_length_245_cov_1.732558_g30310_i0 PRJNA683669 30542 245 1.732558 4.2447671 Pedosphaera parvula 1032527 Bacteria Bacteria 285 2.0000000000000002e-72   NTclustered gi|183579829|emb|AM905426.1| 320771 g30310 i0 91.787 24.4530612244898 207 13 84 4 35 239 1458 1254 Bacterium Ellin514 23S rRNA gene, isolate Ellin514 blastn 5991 285 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Pedosphaerae Pedosphaerales Pedosphaeraceae Pedosphaera Pedosphaera parvula
3215829 3215829 PRJNA683669_P_NODE_28363_length_248_cov_0.880000_g28131_i0 PRJNA683669 28363 248 0.88 2.1824 Verrucomicrobia bacterium IMCC26134 1637999 Bacteria Bacteria 165 2.76e-36   NTclustered gi|807238858|gb|CP011265.1| 1637999 g28131 i0 79.087 1.06048387096774 263 37 99 8 2 246 3031845 3031583 Verrucomicrobia bacterium IMCC26134, complete genome blastn 263 165 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobia bacterium IMCC26134
12144323 12144323 PRJNA683669_P_NODE_22170_length_275_cov_1.524752_g21938_i0 PRJNA683669 22170 275 1.524752 4.193068 Oleiharenicola sp. Vm1 3398393 Bacteria Bacteria 457 4.58e-124   NTclustered gi|2912653302|gb|CP180537.1| 3398393 g21938 i0 96.715 11.7818181818182 274 9 99 0 1 274 3556396 3556669 Oleiharenicola sp. Vm1 chromosome, complete genome blastn 3240 457 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Oleiharenicola Oleiharenicola sp. Vm1
23617849 23617849 PRJNA683669_P_NODE_24079_length_263_cov_1.547368_g23847_i0 PRJNA683669 24079 263 1.547368 4.06957784 Prosthecobacter vanneervenii 48466 Bacteria Bacteria 431 2.639999999999999e-116   NTclustered gi|12583975|gb|AF245379.1|AF245379 48466 g23847 i0 96.198 35.0684410646388 263 10 100 0 1 263 225 487 Prosthecobacter sp. FC-2 23S ribosomal RNA gene, partial sequence blastn 9223 431 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter vanneervenii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;