RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA683669" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA683669 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5003350 5003350 PRJNA683669_P_NODE_4484_length_615_cov_1.516605_g4260_i0 PRJNA683669 4484 615 1.516605 9.32712075 Vermamoeba 1260114 Tubulinea other_Eukaryota 1081 0   NTclustered gi|300078496|gb|GU001158.1| 5778 g4260 i0 98.374 95.9886178861789 615 10 100 0 1 615 2337 2951 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 59033 1081 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
7043576 7043576 PRJNA683669_P_NODE_15686_length_327_cov_1.818898_g15455_i0 PRJNA683669 15686 327 1.818898 5.94779646 Copromyxa protea 931554 Tubulinea other_Eukaryota 281 3.6e-71   NTclustered gi|508737347|dbj|AB766053.1| 931554 g15455 i0 82.65 1.35779816513761 317 55 97 0 11 327 1 317 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 444 281 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
13419005 13419005 PRJNA683669_P_NODE_32831_length_242_cov_1.485207_g32599_i0 PRJNA683669 32831 242 1.485207 3.59420094 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 442 1.1099999999999995e-119   NTclustered gi|909719645|gb|KT185625.1| 5778 g32599 i0 99.587 94.4834710743802 242 1 100 0 1 242 6093 6334 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 22865 442 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
22342233 22342233 PRJNA683669_P_NODE_20558_length_285_cov_1.334906_g20326_i0 PRJNA683669 20558 285 1.334906 3.8044821 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 448 2.8699999999999997e-121   NTclustered gi|909719645|gb|KT185625.1| 5778 g20326 i0 95.105 24.5719298245614 286 10 99 4 2 285 7047 6764 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 7003 448 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;