contig_metadata
14 rows where analysis = "blastn", bioproject = "PRJNA683669" and tax_phylum = "Oomycota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1941043 | 1941043 | PRJNA683669_P_NODE_4522_length_612_cov_3.597403_g4298_i0 | PRJNA683669 | 4522 | 612 | 3.597403 | 22.01610636 | Phytophthora sojae | 67593 | SAR_Eukaryotes | SAR_Eukaryotes | 313 | 2.52e-80 | NTclustered | gi|695447497|ref|XM_009536456.1| | 67593 | g4298 | i0 | 79.819 | 53.7483660130719 | 441 | 79 | 72 | 9 | 149 | 587 | 2084 | 1652 | Phytophthora sojae hypothetical protein mRNA | blastn | 32894 | 313 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora sojae | ||
| 3215687 | 3215687 | PRJNA683669_P_NODE_11023_length_388_cov_3.996825_g10792_i0 | PRJNA683669 | 11023 | 388 | 3.996825 | 15.507681 | Phytophthora nicotianae | 4792 | SAR_Eukaryotes | SAR_Eukaryotes | 207 | 7.47e-49 | NTclustered | gi|675188146|ref|XM_008904710.1| | 761204 | g10792 | i0 | 82.833 | 48.5128865979381 | 233 | 38 | 60 | 2 | 59 | 290 | 364 | 133 | Phytophthora parasitica INRA-310 40S ribosomal protein S27-like mRNA | blastn | 18823 | 207 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora nicotianae | ||
| 3215705 | 3215705 | PRJNA683669_P_NODE_13143_length_357_cov_1.355634_g12912_i0 | PRJNA683669 | 13143 | 357 | 1.355634 | 4.83961338 | Saprolegnia parasitica | 101203 | SAR_Eukaryotes | SAR_Eukaryotes | 52.8 | 0.034 | NTclustered | gi|813226630|ref|XM_012357002.1| | 695850 | g12912 | i0 | 100 | 0.0784313725490196 | 28 | 0 | 8 | 0 | 197 | 224 | 541 | 514 | Saprolegnia parasitica CBS 223.65 hypothetical protein partial mRNA | blastn | 28 | 52.8 | 1 | Eukaryota | Sar | Oomycota | Saprolegniomycetes | Saprolegniales | Saprolegniaceae | Saprolegnia | Saprolegnia parasitica | ||
| 3215963 | 3215963 | PRJNA683669_P_NODE_8143_length_448_cov_1.434667_g7912_i0 | PRJNA683669 | 8143 | 448 | 1.434667 | 6.42730816 | Phytophthora sojae | 67593 | SAR_Eukaryotes | SAR_Eukaryotes | 207 | 8.75e-49 | NTclustered | gi|695460914|ref|XM_009539807.1| | 67593 | g7912 | i0 | 90.909 | 34.4754464285714 | 154 | 14 | 34 | 0 | 3 | 156 | 201 | 354 | Phytophthora sojae hypothetical protein mRNA | blastn | 15445 | 207 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora sojae | ||
| 3215964 | 3215964 | PRJNA683669_P_NODE_8403_length_441_cov_1.160326_g8172_i0 | PRJNA683669 | 8403 | 441 | 1.160326 | 5.11703766 | Saprolegnia parasitica | 101203 | SAR_Eukaryotes | SAR_Eukaryotes | 52.8 | 0.043 | NTclustered | gi|813126221|ref|XM_012341568.1| | 695850 | g8172 | i0 | 100 | 0.0634920634920635 | 28 | 0 | 6 | 0 | 8 | 35 | 3836 | 3809 | Saprolegnia parasitica CBS 223.65 hypothetical protein partial mRNA | blastn | 28 | 52.8 | 1 | Eukaryota | Sar | Oomycota | Saprolegniomycetes | Saprolegniales | Saprolegniaceae | Saprolegnia | Saprolegnia parasitica | ||
| 3726694 | 3726694 | PRJNA683669_P_NODE_25303_length_255_cov_1.324176_g25071_i0 | PRJNA683669 | 25303 | 255 | 1.324176 | 3.3766488 | Phytophthora | 4783 | SAR_Eukaryotes | SAR_Eukaryotes | 121 | 6.259999999999999e-23 | NTclustered | gi|156986803|gb|EU079734.1| | 129351 | g25071 | i0 | 87.5 | 36.7647058823529 | 104 | 13 | 41 | 0 | 144 | 247 | 43 | 146 | Phytophthora heveae isolate PD_00117(P1102) heat shock protein 90 (HSP90) gene, partial cds | blastn | 9375 | 121 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora heveae | ||
| 8318202 | 8318202 | PRJNA683669_P_NODE_34227_length_241_cov_0.863095_g33995_i0 | PRJNA683669 | 34227 | 241 | 0.863095 | 2.08005895 | Phytophthora nicotianae | 4792 | SAR_Eukaryotes | SAR_Eukaryotes | 163 | 9.61e-36 | NTclustered | gi|675207376|ref|XM_008914325.1| | 761204 | g33995 | i0 | 80.751 | 28.1286307053942 | 213 | 37 | 87 | 2 | 10 | 218 | 382 | 594 | Phytophthora parasitica INRA-310 hypothetical protein, variant mRNA | blastn | 6779 | 163 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora nicotianae | ||
| 9593568 | 9593568 | PRJNA683669_P_NODE_21028_length_282_cov_1.416268_g20796_i0 | PRJNA683669 | 21028 | 282 | 1.416268 | 3.99387576 | Phytophthora infestans | 4787 | SAR_Eukaryotes | SAR_Eukaryotes | 211 | 4.06e-50 | NTclustered | gi|301104768|ref|XM_002901423.1| | 403677 | g20796 | i0 | 81.273 | 85.9964539007092 | 267 | 45 | 94 | 5 | 1 | 265 | 3654 | 3391 | Phytophthora infestans T30-4 ferredoxin-dependent glutamate synthase, putative (PITG_12037), partial mRNA | blastn | 24251 | 211 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora infestans | ||
| 12144431 | 12144431 | PRJNA683669_P_NODE_34430_length_226_cov_2.013072_g34198_i0 | PRJNA683669 | 34430 | 226 | 2.013072 | 4.54954272 | Phytophthora cinnamomi | 4785 | SAR_Eukaryotes | SAR_Eukaryotes | 169 | 1.91e-37 | NTclustered | gi|2795026083|ref|XM_067925526.1| | 4785 | g34198 | i0 | 80.263 | 8.78318584070797 | 228 | 41 | 100 | 4 | 1 | 226 | 888 | 663 | Phytophthora cinnamomi alanine-tRNA ligase (IUM83_01657), partial mRNA | blastn | 1985 | 169 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora cinnamomi | ||
| 14693843 | 14693843 | PRJNA683669_P_NODE_11972_length_373_cov_1.800000_g11741_i0 | PRJNA683669 | 11972 | 373 | 1.8 | 6.714 | Saprolegnia parasitica | 101203 | SAR_Eukaryotes | SAR_Eukaryotes | 211 | 5.53e-50 | NTclustered | gi|813198778|ref|XM_012353582.1| | 695850 | g11741 | i0 | 84.091 | 7.44504021447721 | 220 | 33 | 59 | 2 | 79 | 297 | 336 | 118 | Saprolegnia parasitica CBS 223.65 autophagy-like protein 8 mRNA | blastn | 2777 | 211 | 1 | Eukaryota | Sar | Oomycota | Saprolegniomycetes | Saprolegniales | Saprolegniaceae | Saprolegnia | Saprolegnia parasitica | ||
| 15203461 | 15203461 | PRJNA683669_P_NODE_10872_length_391_cov_0.968553_g10641_i0 | PRJNA683669 | 10872 | 391 | 0.968553 | 3.78704223 | Saprolegnia | 4769 | SAR_Eukaryotes | SAR_Eukaryotes | 261 | 5.71e-65 | NTclustered | gi|813186130|ref|XM_012351847.1| | 695850 | g10641 | i0 | 79.945 | 9.69309462915601 | 364 | 66 | 92 | 7 | 6 | 365 | 382 | 22 | Saprolegnia parasitica CBS 223.65 RuvB-like 2 partial mRNA | blastn | 3790 | 261 | 1 | Eukaryota | Sar | Oomycota | Saprolegniomycetes | Saprolegniales | Saprolegniaceae | Saprolegnia | Saprolegnia parasitica | ||
| 15967823 | 15967823 | PRJNA683669_P_NODE_9253_length_420_cov_2.187320_g9022_i0 | PRJNA683669 | 9253 | 420 | 2.18732 | 9.186744 | Saprolegnia diclina | 112098 | SAR_Eukaryotes | SAR_Eukaryotes | 254 | 1.03e-62 | NTclustered | gi|669137463|ref|XM_008606078.1| | 1156394 | g9022 | i0 | 82.095 | 50.7761904761905 | 296 | 53 | 70 | 0 | 125 | 420 | 25 | 320 | Saprolegnia diclina VS20 heat shock protein 90-2 partial mRNA | blastn | 21326 | 254 | 1 | Eukaryota | Sar | Oomycota | Saprolegniomycetes | Saprolegniales | Saprolegniaceae | Saprolegnia | Saprolegnia diclina | ||
| 21067532 | 21067532 | PRJNA683669_P_NODE_5837_length_533_cov_1.167391_g5608_i0 | PRJNA683669 | 5837 | 533 | 1.167391 | 6.22219403 | Phytophthora nicotianae | 4792 | SAR_Eukaryotes | SAR_Eukaryotes | 496 | 2.01e-135 | NTclustered | gi|675213684|ref|XM_008917479.1| | 761204 | g5608 | i0 | 86.404 | 14.2926829268293 | 456 | 58 | 85 | 4 | 1 | 454 | 772 | 319 | Phytophthora parasitica INRA-310 hypothetical protein partial mRNA | blastn | 7618 | 496 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora nicotianae | ||
| 24891012 | 24891012 | PRJNA683669_P_NODE_11020_length_388_cov_6.155556_g10789_i0 | PRJNA683669 | 11020 | 388 | 6.155556 | 23.88355728 | Phytophthora sojae | 67593 | SAR_Eukaryotes | SAR_Eukaryotes | 183 | 1.26e-41 | NTclustered | gi|695370545|ref|XM_009516042.1| | 67593 | g10789 | i0 | 78.571 | 68.0128865979381 | 294 | 51 | 74 | 12 | 73 | 360 | 58 | 345 | Phytophthora sojae hypothetical protein mRNA | blastn | 26389 | 183 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora sojae |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;