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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJNA683669" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 10 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA683669 · 10 ✖

analysis 1

  • blastn · 10 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
664880 664880 PRJNA683669_P_NODE_13861_length_348_cov_1.120000_g13630_i0 PRJNA683669 13861 348 1.12 3.8976 Brugia malayi 6279 Nematoda Nematoda 255 2.34e-63   NTclustered gi|2082298039|ref|XM_043075942.1| 6279 g13630 i0 82.979 64.0143678160919 282 48 81 0 23 304 282 1 Brugia malayi Uncharacterized protein (Bma-tbb-4), partial mRNA blastn 22277 255 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia malayi
665091 665091 PRJNA683669_P_NODE_9201_length_421_cov_2.643678_g8970_i0 PRJNA683669 9201 421 2.643678 11.12988438 Caenorhabditis elegans 6239 Nematoda Nematoda 54.7 0.011   NTclustered gi|1831517864|ref|NM_001136422.4| 6239 g8970 i0 100 0.275534441805226 29 0 7 0 340 368 36 8 Caenorhabditis elegans FIP (Fungus-Induced Protein) Related (fipr-2), partial mRNA blastn 116 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
3215726 3215726 PRJNA683669_P_NODE_15863_length_325_cov_5.456349_g15632_i0 PRJNA683669 15863 325 5.456349 17.73313425 Koerneria sp. RS1982 358044 Nematoda Nematoda 185 2.8899999999999995e-42   NTclustered gi|150984687|gb|EF635005.1| 358044 g15632 i0 85.556 26.5753846153846 180 23 54 1 44 220 15 194 Koerneria sp. RS1982 small subunit ribosomal protein 28 (rps-28) mRNA, complete cds blastn 8637 185 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Koerneria Koerneria sp. RS1982
5768570 5768570 PRJNA683669_P_NODE_21805_length_277_cov_2.406863_g21573_i0 PRJNA683669 21805 277 2.406863 6.66701051 Strongyloides papillosus 174720 Nematoda Nematoda 161 4.06e-35   NTclustered gi|690022274|emb|LM530102.1| 174720 g21573 i0 81.373 70.3285198555957 204 32 73 6 77 277 227 27 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0004347 blastn 19481 161 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
10869073 10869073 PRJNA683669_P_NODE_8229_length_446_cov_1.332440_g7998_i0 PRJNA683669 8229 446 1.33244 5.9426824 Strongyloides papillosus 174720 Nematoda Nematoda 327 6.41e-85   NTclustered gi|687022644|emb|LM525558.1| 174720 g7998 i0 82.171 55.6748878923767 387 63 86 6 56 439 232206 232589 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000004 blastn 24831 327 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
14693989 14693989 PRJNA683669_P_NODE_31052_length_245_cov_0.895349_g30820_i0 PRJNA683669 31052 245 0.895349 2.19360505 Pseudocapillaria tomentosa 1904821 Nematoda Nematoda 425 1.1299999999999999e-114   NTclustered gi|2095998828|gb|MZ708958.1| 1904821 g30820 i0 97.959 1 245 5 100 0 1 245 4538 4294 Pseudocapillaria tomentosa mitochondrion, complete genome blastn 245 425 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pseudocapillaria Pseudocapillaria tomentosa
17242832 17242832 PRJNA683669_P_NODE_15514_length_329_cov_1.640625_g15283_i0 PRJNA683669 15514 329 1.640625 5.39765625 Strongyloides ratti 34506 Nematoda Nematoda 224 6.2e-54   NTclustered gi|1376134167|ref|XM_024647028.1| 34506 g15283 i0 79.217 13.7933130699088 332 61 99 8 1 328 745 418 Strongyloides ratti Alpha actinin (SRAE_1000022200), partial mRNA blastn 4538 224 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
18517028 18517028 PRJNA683669_P_NODE_22335_length_274_cov_1.532338_g22103_i0 PRJNA683669 22335 274 1.532338 4.19860612 Pseudocapillaria tomentosa 1904821 Nematoda Nematoda 501 2.08e-137   NTclustered gi|2095998828|gb|MZ708958.1| 1904821 g22103 i0 99.635 75.4014598540146 274 1 100 0 1 274 5747 6020 Pseudocapillaria tomentosa mitochondrion, complete genome blastn 20660 501 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pseudocapillaria Pseudocapillaria tomentosa
18517179 18517179 PRJNA683669_P_NODE_7555_length_465_cov_5.295918_g7324_i0 PRJNA683669 7555 465 5.295918 24.6260187 Pseudocapillaria tomentosa 1904821 Nematoda Nematoda 854 0   NTclustered gi|2095998828|gb|MZ708958.1| 1904821 g7324 i0 99.785 48.2709677419355 465 1 100 0 1 465 3053 2589 Pseudocapillaria tomentosa mitochondrion, complete genome blastn 22446 854 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pseudocapillaria Pseudocapillaria tomentosa
21067533 21067533 PRJNA683669_P_NODE_5957_length_527_cov_1.185022_g5728_i0 PRJNA683669 5957 527 1.185022 6.24506594 Pseudocapillaria tomentosa 1904821 Nematoda Nematoda 952 0   NTclustered gi|2095998828|gb|MZ708958.1| 1904821 g5728 i0 99.427 78.4421252371916 524 3 99 0 4 527 6641 6118 Pseudocapillaria tomentosa mitochondrion, complete genome blastn 41339 952 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pseudocapillaria Pseudocapillaria tomentosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;