RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA683669" and tax_phylum = "Myxococcota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA683669 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
664887 664887 PRJNA683669_P_NODE_14421_length_341_cov_1.432836_g14190_i0 PRJNA683669 14421 341 1.432836 4.88597076 Pendulispora brunnea 2905690 Bacteria Bacteria 60.2 1.93e-4   NTclustered gi|2698055994|gb|CP089982.1| 2905690 g14190 i0 100 0.524926686217009 32 0 9 0 135 166 5501220 5501189 Pendulispora brunnea strain MSr12523 chromosome, complete genome blastn 179 60.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora brunnea
664899 664899 PRJNA683669_P_NODE_16621_length_318_cov_0.942857_g16390_i0 PRJNA683669 16621 318 0.942857 2.99828526 Sorangium cellulosum 56 Bacteria Bacteria 58.4 6.41e-4   NTclustered gi|1338588479|gb|CP012673.1| 56 g16390 i0 83.077 0.20440251572327 65 9 20 2 226 289 1416866 1416929 Sorangium cellulosum strain So ce26 chromosome, complete genome blastn 65 58.4 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
1941040 1941040 PRJNA683669_P_NODE_4182_length_638_cov_1.380531_g3958_i0 PRJNA683669 4182 638 1.380531 8.80778778 Stigmatella aurantiaca 41 Bacteria Bacteria 75 1.35e-8   NTclustered gi|309390350|gb|CP002271.1| 378806 g3958 i0 97.674 0.27115987460815 43 1 7 0 99 141 5286039 5285997 Stigmatella aurantiaca DW4/3-1, complete genome blastn 173 75 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Stigmatella Stigmatella aurantiaca
3215947 3215947 PRJNA683669_P_NODE_6923_length_486_cov_0.932203_g6692_i0 PRJNA683669 6923 486 0.932203 4.53050658 Archangium violaceum 83451 Bacteria Bacteria 58.4 0.001   NTclustered gi|2619762464|gb|CP137851.1| 83451 g6692 i0 100 0.0637860082304527 31 0 6 0 133 163 7027566 7027596 Archangium violaceum strain KYC5002 chromosome, complete genome blastn 31 58.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium violaceum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;