RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA683669" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA683669 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1174893 1174893 PRJNA683669_P_NODE_27121_length_250_cov_0.870056_g26889_i0 PRJNA683669 27121 250 0.870056 2.17514 Naegleria 5761 Heterolobosea other_Eukaryota 462 8.83e-126   NTclustered gi|2618963742|gb|OR769034.1| 5762 g26889 i0 100 700.924 250 0 100 0 1 250 5034 5283 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 175231 462 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
5768583 5768583 PRJNA683669_P_NODE_23685_length_266_cov_1.191710_g23453_i0 PRJNA683669 23685 266 1.19171 3.1699486 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 239 1.74e-58   NTclustered gi|458231|gb|U04381.1|NGU04381 5762 g23453 i0 83.73 13.2669172932331 252 41 95 0 13 264 1123 872 Naegleria gruberi NEG flagellar calmodulin (CAM1) gene, complete cds blastn 3529 239 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
5768634 5768634 PRJNA683669_P_NODE_31745_length_244_cov_0.900585_g31513_i0 PRJNA683669 31745 244 0.900585 2.1974274 Vahlkampfia avara 74082 Heterolobosea other_Eukaryota 451 1.86e-122   NTclustered gi|2283788571|gb|OP179657.1| 74082 g31513 i0 100 84.4713114754098 244 0 100 0 1 244 862 1105 Vahlkampfia avara isolate VA7 small subunit ribosomal RNA gene, partial sequence blastn 20611 451 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia avara
7043720 7043720 PRJNA683669_P_NODE_3506_length_699_cov_3.549521_g3288_i0 PRJNA683669 3506 699 3.549521 24.81115179 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 564 7.249999999999998e-156   NTclustered gi|2031931837|emb|OD956609.1| 5763 g3288 i0 81.672 93.1301859799714 682 121 97 4 20 699 924 1603 Naegleria fowleri Karachi_NF001 strain blastn 65098 564 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
8827895 8827895 PRJNA683669_P_NODE_9847_length_408_cov_2.295522_g9616_i0 PRJNA683669 9847 408 2.295522 9.36572976 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 414 4.34e-111   NTclustered gi|290988633|ref|XM_002676957.1| 5762 g9616 i0 85.149 99.5269607843137 404 60 99 0 3 406 2122 1719 Naegleria gruberi alpha-tubulin TUBA2 (NAEGRDRAFT_39221), mRNA blastn 40607 418 0.990430622009569 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
19791912 19791912 PRJNA683669_P_NODE_26396_length_251_cov_0.865169_g26164_i0 PRJNA683669 26396 251 0.865169 2.17157419 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 403 5.45e-108   NTclustered gi|290985787|ref|XM_002675561.1| 5762 g26164 i0 95.618 1 251 11 100 0 1 251 752 1002 Naegleria gruberi Glycyl-tRNA synthetase (NAEGRDRAFT_60739), partial mRNA blastn 251 403 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
22852281 22852281 PRJNA683669_P_NODE_17918_length_306_cov_0.991416_g17686_i0 PRJNA683669 17918 306 0.991416 3.03373296 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 322 1.97e-83   NTclustered gi|290987763|ref|XM_002676546.1| 5762 g17686 i0 85.714 166.872549019608 308 40 100 4 1 306 715 410 Naegleria gruberi polyubiquitin (NAEGRDRAFT_55791), mRNA blastn 51063 322 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;