RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA683669" and tax_phylum = "Discosea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Discosea · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA683669 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
664858 664858 PRJNA683669_P_NODE_11021_length_388_cov_4.882540_g10790_i0 PRJNA683669 11021 388 4.88254 18.9442552 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 292 2.01e-74   NTclustered gi|470442906|ref|XM_004339540.1| 1257118 g10790 i0 84.88 25.139175257732 291 42 75 2 43 332 330 41 Acanthamoeba castellanii str. Neff 60S ribosomal protein, putative (ACA1_063390), partial mRNA blastn 9754 292 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
1940970 1940970 PRJNA683669_P_NODE_2662_length_806_cov_4.182810_g2467_i0 PRJNA683669 2662 806 4.18281 33.7134486 Paramoeba perurans 437603 Discosea other_Eukaryota 627 1.0599999999999999e-174   NTclustered gi|2048770422|gb|MW534135.1| 437603 g2467 i0 82.289 43.227047146402 734 120 90 9 64 792 741 13 Paramoeba perurans isolate PPER_00019895 multifunctional chaperone mRNA, complete cds blastn 34841 627 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba perurans
8318030 8318030 PRJNA683669_P_NODE_10707_length_393_cov_2.150000_g10476_i0 PRJNA683669 10707 393 2.15 8.4495 Paramoeba perurans 437603 Discosea other_Eukaryota 355 2.56e-93   NTclustered gi|2048770422|gb|MW534135.1| 437603 g10476 i0 83.684 26.972010178117 380 58 96 3 2 379 390 13 Paramoeba perurans isolate PPER_00019895 multifunctional chaperone mRNA, complete cds blastn 10600 355 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba perurans
9593558 9593558 PRJNA683669_P_NODE_20188_length_287_cov_1.401869_g19956_i0 PRJNA683669 20188 287 1.401869 4.02336403 Paramoeba perurans 437603 Discosea other_Eukaryota 152 2.5399999999999996e-32   NTclustered gi|2635491373|gb|OR923386.1| 437603 g19956 i0 81.407 2.90243902439024 199 26 68 9 24 218 914 723 Paramoeba perurans clone PPER_00013037 heat shock 90 mRNA, complete cds blastn 833 152 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba perurans
10868922 10868922 PRJNA683669_P_NODE_19169_length_295_cov_0.891892_g18937_i0 PRJNA683669 19169 295 0.891892 2.6310814 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 65.8 3.52e-6   NTclustered gi|470372090|ref|XM_004332845.1| 1257118 g18937 i0 95.122 0.379661016949153 41 2 14 0 225 265 4226 4186 Acanthamoeba castellanii str. Neff putative DNA helicase (ACA1_144810), partial mRNA blastn 112 65.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
12144478 12144478 PRJNA683669_P_NODE_710_length_1408_cov_8.776779_g624_i0 PRJNA683669 710 1408 8.776779 123.57704832 Paramoeba branchiphila 308475 Discosea other_Eukaryota 1251 0   NTclustered gi|226347442|gb|FJ807261.1| 308475 g624 i0 85.465 65.4225852272727 1204 169 85 6 141 1341 1202 2 Neoparamoeba branchiphila strain AMOP1 elongation factor 1 alpha gene, partial cds blastn 92115 1251 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba branchiphila
17242964 17242964 PRJNA683669_P_NODE_34254_length_238_cov_3.593939_g34022_i0 PRJNA683669 34254 238 3.593939 8.55357482 Paramoeba pemaquidensis 180228 Discosea other_Eukaryota 270 5.42e-68   NTclustered gi|575488798|gb|KF772979.1| 180228 g34022 i0 88.393 92.8025210084034 224 26 94 0 2 225 224 1 Paramoeba pemaquidensis strain PA027 beta actin mRNA, partial cds blastn 22087 270 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba pemaquidensis
22342223 22342223 PRJNA683669_P_NODE_19618_length_291_cov_1.059633_g19386_i0 PRJNA683669 19618 291 1.059633 3.08353203 Paramoeba perurans 437603 Discosea other_Eukaryota 272 1.8999999999999998e-68   NTclustered gi|2048770422|gb|MW534135.1| 437603 g19386 i0 86.345 9.43986254295533 249 34 86 0 1 249 493 741 Paramoeba perurans isolate PPER_00019895 multifunctional chaperone mRNA, complete cds blastn 2747 272 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba perurans

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;