RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA683669" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA683669 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10868864 10868864 PRJNA683669_P_NODE_1129_length_1185_cov_5.646583_g1001_i0 PRJNA683669 1129 1185 5.646583 66.91200855 Polychytrium aggregatum 110093 Fungi Fungi 542 5.88e-149   NTclustered gi|2432157894|ref|XM_053108463.1| 110093 g1001 i0 78.42 50.7856540084388 848 171 71 9 86 926 104 946 Polychytrium aggregatum ribosomal protein L4 domain-containing protein (BJ171DRAFT_461012), mRNA blastn 60181 542 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
12144350 12144350 PRJNA683669_P_NODE_2410_length_842_cov_5.929779_g2221_i0 PRJNA683669 2410 842 5.929779 49.92873918 Fimicolochytrium jonesii 1396493 Fungi Fungi 411 1.21e-109   NTclustered gi|2432098059|ref|XM_053071244.1| 1396493 g2221 i0 80.251 68.186460807601 557 100 66 6 120 671 142 693 Fimicolochytrium jonesii 60S ribosomal protein I1-a (EV422DRAFT_542036), mRNA blastn 57413 411 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii
12144442 12144442 PRJNA683669_P_NODE_4410_length_621_cov_6.052920_g4186_i0 PRJNA683669 4410 621 6.05292 37.5886332 Polychytrium aggregatum 110093 Fungi Fungi 315 7.12e-81   NTclustered gi|2432142218|ref|XM_053114797.1| 110093 g4186 i0 79.814 65.1207729468599 431 87 69 0 149 579 500 70 Polychytrium aggregatum ribosomal protein S13/S18-domain-containing protein (BJ171DRAFT_597985), partial mRNA blastn 40440 315 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
21067385 21067385 PRJNA683669_P_NODE_19177_length_294_cov_3.601810_g18945_i0 PRJNA683669 19177 294 3.60181 10.5893214 Fimicolochytrium jonesii 1396493 Fungi Fungi 128 4.41e-25   NTclustered gi|2432058563|ref|XM_053065718.1| 1396493 g18945 i0 79.558 2.81632653061224 181 35 61 2 106 285 80 259 Fimicolochytrium jonesii 40S ribosomal protein S28 (EV422DRAFT_248144), mRNA blastn 828 128 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;