RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA683669" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA683669 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11378469 11378469 PRJNA683669_P_NODE_2729_length_796_cov_1.894882_g2534_i0 PRJNA683669 2729 796 1.894882 15.08326072 Sellaphora 216740 SAR_Eukaryotes SAR_Eukaryotes 678 0   NTclustered gi|134143232|gb|EF151962.1| 216741 g2534 i0 99.464 46.6105527638191 373 2 47 0 1 373 374 2 Sellaphora pupula clone RBG1 18S ribosomal RNA gene, partial sequence blastn 37102 684 0.991228070175439 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Sellaphoraceae Sellaphora Sellaphora pupula
12144451 12144451 PRJNA683669_P_NODE_4730_length_597_cov_2.072519_g4505_i0 PRJNA683669 4730 597 2.0725189999999998 12.37293843 Naviculales sp. 2126271 SAR_Eukaryotes SAR_Eukaryotes 1048 0   NTclustered gi|2633519340|gb|OR805654.1| 2126271 g4505 i0 98.328 198.340033500838 598 9 100 1 1 597 122184 121587 Naviculales sp. strain SZCZO2114 plastid, complete genome blastn 118409 1048 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales     Naviculales sp.
13418927 13418927 PRJNA683669_P_NODE_21331_length_280_cov_1.859903_g21099_i0 PRJNA683669 21331 280 1.859903 5.2077284 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 204 6.73e-48   NTclustered gi|219126924|ref|XM_002183661.1| 556484 g21099 i0 80.427 1.83571428571429 281 44 99 8 2 280 315 586 Phaeodactylum tricornutum CCAP 1055/1 predicted protein partial mRNA blastn 514 204 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
14693936 14693936 PRJNA683669_P_NODE_252_length_2054_cov_16.685512_g212_i0 PRJNA683669 252 2054 16.685512 342.72041648 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 1458 0   NTclustered gi|219111198|ref|XM_002177315.1| 556484 g212 i0 80.929 77.8763388510224 1851 347 90 6 79 1926 68 1915 Phaeodactylum tricornutum CCAP 1055/1 protein heat shock protein Hsp70 (HSP70A), mRNA blastn 159958 1458 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
18517163 18517163 PRJNA683669_P_NODE_6595_length_498_cov_1.621176_g6364_i0 PRJNA683669 6595 498 1.621176 8.07345648 Thalassiosira pseudonana 35128 SAR_Eukaryotes SAR_Eukaryotes 331 5.5800000000000006e-86   NTclustered gi|224004207|ref|XM_002295719.1| 296543 g6364 i0 80.044 75.9196787148594 451 86 90 4 37 485 479 31 Thalassiosira pseudonana CCMP1335 calmodulin (CAM1), mRNA blastn 37808 331 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Thalassiosiraceae Thalassiosira Thalassiosira pseudonana
22852237 22852237 PRJNA683669_P_NODE_11898_length_374_cov_2.674419_g11667_i0 PRJNA683669 11898 374 2.674419 10.00232706 Naviculaceae 67474 SAR_Eukaryotes SAR_Eukaryotes 619 7.78e-173   NTclustered gi|168145882|emb|AM710516.1| 137466 g11667 i0 96.524 98.9144385026738 374 13 100 0 1 374 391 18 Eolimna minima partial 28S rRNA gene, strain AT-70Gel18 blastn 36994 625 0.9904 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Eolimna Eolimna minima
25401455 25401455 PRJNA683669_P_NODE_5560_length_546_cov_3.238901_g5332_i0 PRJNA683669 5560 546 3.238901 17.68439946 Phaeodactylum 2849 SAR_Eukaryotes SAR_Eukaryotes 630 5.4199999999999985e-176   NTclustered gi|146762526|gb|EF553458.1| 2850 g5332 i0 87.5 91.5989010989011 560 52 100 13 1 546 4169 4724 Phaeodactylum tricornutum strain CCAP 1055/1 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 50013 634 0.993690851735016 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;