RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA683669" and tax_phylum = "Acidobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA683669 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7552705 7552705 PRJNA683669_P_NODE_11526_length_380_cov_1.361564_g11295_i0 PRJNA683669 11526 380 1.361564 5.1739432 Chloracidobacterium 458032 Bacteria Bacteria 52.8 0.036   NTclustered gi|2033635510|gb|CP072632.1| 458033 g11295 i0 100 0.589473684210526 28 0 7 0 111 138 1583414 1583387 Chloracidobacterium thermophilum strain B chromosome 1, complete sequence blastn 224 52.8 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Chloracidobacterium Chloracidobacterium thermophilum
10869072 10869072 PRJNA683669_P_NODE_8089_length_449_cov_2.571809_g7858_i0 PRJNA683669 8089 449 2.571809 11.54742241 Thermoanaerobaculaceae bacterium 2699758 Bacteria Bacteria 52.8 0.043   NTclustered gi|2874254005|emb|OY970330.1| 2699758 g7858 i0 100 0.0623608017817372 28 0 6 0 174 201 6298384 6298411 MAG: Thermoanaerobaculaceae bacterium isolate MFD05537.bin.c.1 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia Thermoanaerobaculales Thermoanaerobaculaceae   Thermoanaerobaculaceae bacterium
19791847 19791847 PRJNA683669_P_NODE_16176_length_322_cov_1.546185_g15945_i0 PRJNA683669 16176 322 1.546185 4.9787157 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 320 7.5e-83   NTclustered gi|2621707050|emb|OY764903.1| 2212468 g15945 i0 85 113.723602484472 320 42 99 6 5 322 3557775 3557460 MAG: Bryobacteraceae bacterium isolate d7944118-f527-4ba8-a886-cdd3ae4bc3f8 genome assembly, chromosome: 1 blastn 36619 320 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;